Transcript Information: R_Transcript_93709.p1


Annotated TAIR IDAT5G01530.1
Annotated Gene Namelight harvesting complex photosystem II
Annotated Gene Symbol(s)LHCB4.1
Annotation TypeOrtholog
Chromosome Positionchr5:209084-210243 | Forward length=290
E-Value1.6E-173
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 127.67009367658
Replicate 22.4740863547867
Replicate 37.1492365745954
Condition 2: 8 Hour
Replicate 17.7980461615431
Replicate 23.4894369752169
Replicate 33.0638068881545
Condition 3: 24 Hour
Replicate 14.1675000381501
Replicate 22.1071903398641
Replicate 33.2761850964464


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_93709.p1 GENE.R_Transcript_93709~~R_Transcript_93709.p1 ORF type:complete len:314 (+),score=46.66,Chloroa_b-bind|PF00504.17|2e-49 R_Transcript_93709:81-944(+)
ATGGCCTCGGCCACCGCCACTGCCGCCACATCATCATTTATCGGTACCCGCCTCACAGATATACCATCCAACTCGGGCCGGGTGATGGCCCGGTTTGGGTTTGGAACCAAGAAGGTAGCCCCTAAGAAGGCATCATCTAAGTCCAACTCGGGCTCGGATCGGCCTTTGTGGTACCCTGGGGCCAAGGCCCCAGAGTGGTTAGATGGGAACCTGGTGGGTGACTATGGGTTTGATCCCTTTGGGCTTGGCAAGCCTGCTGAGTATTTACAATACGACTATGACTCATTGGACCAGAACTTGGCCAAGAACGTGGCTGGTGATGTTATTGGGACCCGGATCGAGAGCTCGGATGTCAAGTCCACAGCCCTTCAGCCCTACAGTGAAGTGTTTGGGCTTCAGAGGTTTAGAGAGTGTGAGCTGATCCATGGTAGATGGGCTATGTTGGCCACTCTTGGTGCCTTGACTGTTGAGTGGCTTACTGGTGTTACATGGCAAGATGCTGGCAAGGTGGAGCTAATTGAGGGATCATCATACCTCGGGCAACCACTACCCTTCTCAATAACTACATTGATCTGGATAGAGGTTTTGGTCATTGGGTACATTGAATTCCAGAGGAACAATGAGCTTGACCCGGAAAAGAGGTTATACCCAGGTGGCAGCTTTTTCGACCCGCTAGGGCTGGCAGCCGACCCCGAGAAGAAGGCCAAGCTTCAACTTGCAGAGATCAAGCATGCCAGGCTTGCTATGGTTGCCTTCCTTGGTTTTGCTGTTCAAGCTGCCGTTACCGGCAAAGGCCCGCTCAACAACTGGGCAACCCATTTGAGTGACCCGCTCCACACTACTATTCTGGACACAATCCTGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_93709.p1 GENE.R_Transcript_93709~~R_Transcript_93709.p1 ORF type:complete len:314 (+),score=46.66,Chloroa_b-bind|PF00504.17|2e-49 R_Transcript_93709:81-944(+)
MASATATAATSSFIGTRLTDIPSNSGRVMARFGFGTKKVAPKKASSKSNSGSDRPLWYPGAKAPEWLDGNLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNVAGDVIGTRIESSDVKSTALQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELIEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNNELDPEKRLYPGGSFFDPLGLAADPEKKAKLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTILDTIL*

Click here to download the sequence:
Link to NCBI Protein BLAST