Transcript Information: R_Transcript_94548.p1


Annotated TAIR IDAT5G03340.1
Annotated Gene NameATPase, AAA-type, CDC48 protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:810091-813133 | Reverse length=810
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1194.50246759917
Replicate 2153.78230923719
Replicate 3182.68690231387
Condition 2: 8 Hour
Replicate 1169.06762443154
Replicate 2199.14468530838
Replicate 3246.50695957612
Condition 3: 24 Hour
Replicate 1225.45816875227
Replicate 2204.66625143756
Replicate 3217.84767461885


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_94548.p1 GENE.R_Transcript_94548~~R_Transcript_94548.p1 ORF type:complete len:808 (+),score=239.29,AAA|PF00004.25|2.5e-48,AAA|PF00004.25|4.4e-47,CDC48_N|PF02359.14|5.3e-22,RuvB_N|PF05496.8|9.4e-06,RuvB_N|PF05496.8|1.3e-05,AAA_2|PF07724.10|3e-06,AAA_2|PF07724.10|0.0021,AAA_2|PF07724.10|5.2e+03,CDC48_2|PF02933.13|2.4e-12,AAA_16|PF13191.2|0.00098,AAA_16|PF13191.2|0.0001,AAA_16|PF13191.2|4.8e+03,AAA_17|PF13207.2|3.6e-05,AAA_17|PF13207.2|0.012,AAA_17|PF13207.2|2.5e+03,AAA_22|PF13401.2|2.5e+03,AAA_22|PF13401.2|0.0052,AAA_22|PF13401.2|0.061,AAA_22|PF13401.2|7.6e+02,AAA_5|PF07728.10|5.7e-05,AAA_5|PF07728.10|0.022,AAA_33|PF13671.2|0.00018,AAA_33|PF13671.2|0.0057,AAA_14|PF13173.2|0.0038,AAA_14|PF13173.2|0.023,TIP49|PF06068.9|0.00087,TIP49|PF06068.9|0.042,AAA_18|PF13238.2|0.0044,AAA_18|PF13238.2|0.061,AAA_25|PF13481.2|4.8,AAA_25|PF13481.2|0.16,AAA_25|PF13481.2|0.3,AAA_25|PF13481.2|6.1e+02,Arch_ATPase|PF01637.14|2,Arch_ATPase|PF01637.14|1.7,Arch_ATPase|PF01637.14|0.29,RNA_helicase|PF00910.18|0.7,RNA_helicase|PF00910.18|0.0056,Mg_chelatase|PF01078.17|0.048,Mg_chelatase|PF01078.17|0.027,AAA_19|PF13245.2|0.053,AAA_19|PF13245.2|0.11,IstB_IS21|PF01695.13|0.16,IstB_IS21|PF01695.13|0.035,NACHT|PF05729.8|4.2,NACHT|PF05729.8|1.8e+03,NACHT|PF05729.8|0.28,NACHT|PF05729.8|67,ABC_tran|PF00005.23|5.6,ABC_tran|PF00005.23|0.016 R_Transcript_94548:213-2636(+)
ATGGCTGACAAACCTGAATCTTCAGATTCGAAGGGAGCGAAGAAGGATTTCAGTACGGCGATTCTTGAGAGAAAGAAGGCTCCGAATCGGTTGGTTGTAGATGAAGCTGTCAATGACGACAATTCAGTGGTTTCTATGCACCCTGATACGATGGAAAAGCTTCAGCTTTTTCGGGGTGATACGGTTCTAGTTAAGGGAAAGAAAAGGAGAGATACAATCTGTATTGCTCTTGCTGACGAGACATGTGAAGAACCCAAAATTAGGATGAACAAGGTTGTAAGGTCAAACCTAAGGGTGAGACTTGGAGATGTGGTTTCTGTACATCAGTGTCCTGATGTAAAGTATGGGAAACGGGTGCATATTCTTCCTATTGATGACACTGTTGAGGGAGTCACTGGAAATCTCTTTGATGCTTACTTGAAACCTTACTTCTTGGAAGCATATCGTCCTGTGCGAAAAGGTGACTTGTTTCTTGTTAGAGGGGGTATGAGGAGTGTAGAGTTTAAGGTCATTGAGACTGACCCTCCTGAGTACTGTGTTGTGGCCCCTGATACTGAGATCTACTGTGAGGGGGAGCCTGTAAAACGAGAAGATGAAAATAGATTGGATGAGGTTGGCTATGATGATGTTGGTGGAGTACGTAAGCAGATGGCACAGATTAGGGAGCTAGTGGAGCTGCCACTTAGACATCCTCAACTGTTCAAATCAATTGGTGTGAAGCCACCAAAAGGAATTCTTCTTTATGGACCTCCAGGGTCTGGGAAAACTTTAATAGCTCGAGCTGTTGCCAATGAAACTGGTGCTTTCTTCTTCTGTATTAACGGACCCGAGATAATGTCGAAATTGGCTGGGGAAAGTGAAAGCAATCTCAGAAAAGCATTTGAGGAAGCAGAGAAAAATGCTCCATCCATCATCTTTATTGATGAAATTGATTCAATTGCACCAAAAAGAGAGAAGACAAATGGAGAGGTTGAGAGACGTATTGTTTCCCAGCTTCTGACACTAATGGATGGGCTCAAATCTCGTGCGCATGTTATTGTCATTGGGGCGACTAATCGTCCTAACAGCATTGATCCCGCATTGAGAAGGTTTGGCAGATTTGACAGGGAAATCGACATTGGTGTTCCAGATGAAGTTGGGAGGCTTGAGATCCTTCGTATTCACACAAAAAACATGAAGCTTGCTGAAGATGTCGACCTTGAAAGGATTTCAAAGGAGACACATGGCTATGTTGGTGCTGATTTAGCTGCTTTATGTACTGAAGCAGCTCTTCAATGTATCAGAGAGAAGATGGATGTGATTGATTTGGAAGATGAGACAATTGATGCAGAGGTTCTCAATTCGATGGCTGTTACAAATGAACATTTCCAGACTGCTCTTGGACAGAGTAATCCATCTGCTCTGCGAGAAACAGTTGTTGAAGTACCGAATGTCAGTTGGGAGGATATTGGTGGCCTTGAAAATGTTAAGAGAGAGCTTCAAGAGACTGTACAATATCCTGTGGAGCATCCTGACAAATTTGAGAAATTCGGGATGTCACCTTCTAAGGGAGTTCTTTTCTATGGACCTCCTGGATGTGGAAAGACTTTGCTGGCCAAGGCTATTGCAAATGAATGTCAGGCAAACTTTATCAGTGTCAAGGGTCCTGAATTGCTAACGATGTGGTTCGGAGAGAGTGAGGCTAATGTTCGTGAGATTTTTGACAAGGCTCGGCAATCAGCTCCTTGTGTTCTATTTTTTGATGAGCTTGATTCAATTGCAACTCAGAGGGGTAGCAGTGTTGGAGATGCTGGTGGTGCTGCTGACAGAGTTTTGAACCAACTTTTGACTGAAATGGATGGCATGTCTGCCAAGAAAACAGTTTTCATAATTGGAGCCACTAACAGGCCTGATATCATTGATCCAGCCCTTCTTCGACCAGGTCGTCTTGACCAGCTTATTTACATCCCCCTGCCAGATGAGGAATCTCGCCATCAAATTTTCAAGGCTGCCTTGAGGAAGTCTCCTATCGCTAAAGATGTTGACCTTAGGGTTCTTGCCAAGTACACTCAAGGTTTTAGTGGTGCAGATATAACGGAAATATGTCAGCGTGCTTGCAAGTATGCAATCCGAGAGAACATTGAGAAGGATATTGAGAGGGAGAAGAGGAGAAGCGAAAACCCCGAAGCAATGGAGGAGGATGTTGAAGATGAGGTGGCTGAGATAAGGGCTGCACACTTTGAAGAATCCATGAAGTTTGCTCGTAGGAGTGTGAGCGATGCCGATATTCGTAAGTATCAGGCATTTGCTCAGACCTTGCAGCAGTCGAGAGGGTTTGGCTCTGAGTTCCGTTTCTCCAACACCAGCACAGGCGGTACTACCACCACAACTGATGCATTTGCTGCTTCTGCTGGCGGAGCTGATGAAGATGATCTCTACAACTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_94548.p1 GENE.R_Transcript_94548~~R_Transcript_94548.p1 ORF type:complete len:808 (+),score=239.29,AAA|PF00004.25|2.5e-48,AAA|PF00004.25|4.4e-47,CDC48_N|PF02359.14|5.3e-22,RuvB_N|PF05496.8|9.4e-06,RuvB_N|PF05496.8|1.3e-05,AAA_2|PF07724.10|3e-06,AAA_2|PF07724.10|0.0021,AAA_2|PF07724.10|5.2e+03,CDC48_2|PF02933.13|2.4e-12,AAA_16|PF13191.2|0.00098,AAA_16|PF13191.2|0.0001,AAA_16|PF13191.2|4.8e+03,AAA_17|PF13207.2|3.6e-05,AAA_17|PF13207.2|0.012,AAA_17|PF13207.2|2.5e+03,AAA_22|PF13401.2|2.5e+03,AAA_22|PF13401.2|0.0052,AAA_22|PF13401.2|0.061,AAA_22|PF13401.2|7.6e+02,AAA_5|PF07728.10|5.7e-05,AAA_5|PF07728.10|0.022,AAA_33|PF13671.2|0.00018,AAA_33|PF13671.2|0.0057,AAA_14|PF13173.2|0.0038,AAA_14|PF13173.2|0.023,TIP49|PF06068.9|0.00087,TIP49|PF06068.9|0.042,AAA_18|PF13238.2|0.0044,AAA_18|PF13238.2|0.061,AAA_25|PF13481.2|4.8,AAA_25|PF13481.2|0.16,AAA_25|PF13481.2|0.3,AAA_25|PF13481.2|6.1e+02,Arch_ATPase|PF01637.14|2,Arch_ATPase|PF01637.14|1.7,Arch_ATPase|PF01637.14|0.29,RNA_helicase|PF00910.18|0.7,RNA_helicase|PF00910.18|0.0056,Mg_chelatase|PF01078.17|0.048,Mg_chelatase|PF01078.17|0.027,AAA_19|PF13245.2|0.053,AAA_19|PF13245.2|0.11,IstB_IS21|PF01695.13|0.16,IstB_IS21|PF01695.13|0.035,NACHT|PF05729.8|4.2,NACHT|PF05729.8|1.8e+03,NACHT|PF05729.8|0.28,NACHT|PF05729.8|67,ABC_tran|PF00005.23|5.6,ABC_tran|PF00005.23|0.016 R_Transcript_94548:213-2636(+)
MADKPESSDSKGAKKDFSTAILERKKAPNRLVVDEAVNDDNSVVSMHPDTMEKLQLFRGDTVLVKGKKRRDTICIALADETCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIYCEGEPVKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERISKETHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGQSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPDKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRHQIFKAALRKSPIAKDVDLRVLAKYTQGFSGADITEICQRACKYAIRENIEKDIEREKRRSENPEAMEEDVEDEVAEIRAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFSNTSTGGTTTTTDAFAASAGGADEDDLYN*

Click here to download the sequence:
Link to NCBI Protein BLAST