Transcript Information: R_Transcript_94603.p1


Annotated TAIR IDAT1G08130.1
Annotated Gene NameDNA ligase 1
Annotated Gene Symbol(s)ATLIG1, LIG1
Annotation TypeOrtholog
Chromosome Positionchr1:2542913-2547815 | Reverse length=790
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 115.825340049825
Replicate 210.669387288081
Replicate 314.255635944406
Condition 2: 8 Hour
Replicate 111.21372735978
Replicate 211.306694331239
Replicate 314.416523867886
Condition 3: 24 Hour
Replicate 116.53423004856
Replicate 214.666608798
Replicate 320.267410362522


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_94603.p1 GENE.R_Transcript_94603~~R_Transcript_94603.p1 ORF type:complete len:797 (+),score=197.14,DNA_ligase_A_M|PF01068.17|1.5e-63,DNA_ligase_A_N|PF04675.10|3.8e-40,DNA_ligase_A_C|PF04679.11|3.6e+03,DNA_ligase_A_C|PF04679.11|1.8e-24 R_Transcript_94603:515-2905(+)
ATGTTGAGACTCACATTCACTTTCCGTCCAATAATCAACAACACAACTCTCAAATTCAAACTCCCTCTCCATTCATCATCTATCACTCTCCCCAAAACCTTCACTCTCTCTCCAAAACCCAGAACCCTAACCCCCCTTCTAGCTATGTCTTCTCTCCCTTCGGCTTTCGATGCTCTCATGTCCGGTGCCCGTCAAGCTGCCAAGAAAAAATCCCAAAACCCTATTCCCCCTTCCCCCAAAAAGCGAAAATCTCCTGACCCAATTCAACCCAATTCTGAAAACCCTAAATCCATTTCAGATTCTCCTCAAAATCCCCAGAGTTCCAATCTTTCTCGAAAATCTCCTGACCCGATTCAACCCAAATCAGAAAATCCTAAACCCACTTCAGATTCTCCTCAAAACCCATTTTCTAAAAAGCCCAAAATTGTTGCTGCTGTATTAAATGTGGATGAATTTGTTGGCCAATTGAAGACGAAACCAGCCAATTTTGACCCCAAAAAGGCTGTTTGGTGGGAGCATGGGGACAAGGTTCCCTTTCTTTTTCTTGCAAGGGCTCTTGATTTGATCAAAGACGAGTCGGGTCGGATTGCGATTACTGATATTACTTGTAATGTGTTGAGGGCTGTGATTAAAACAACCCCAGATGATTTGTTAGGGGTTGTTTATCTTTTGGCCAACAAGATTGCTCCTGCTCATGAAGGTGTCGAGCTCGGTATCGGTGATGCTTCTCTGATTAAAGCCCTTGCTGAGGCTTGTGGAGCTACTGAGGCAGTTGTCAAGAAGTCTTATAAGGTTTTAGGTGATTTGGGAGATGTTGCTAAAGAAATTCGTTCAAAGCAAAGCATGATGCGCCAACCCCCTCCATTGACAGTCGCTAAAGTTTTCAGTACATTCCAGCAGATTGCCAAGGCATCGGGAAAAGACAGTCAAGAAAGGAAAAAGAGCCTTATTAAGTCGCTTCTTGTGGCTGCCAAAGATTGTGAACCTGTATATTTGATGCGGCTGCTTCAGTCAAAATTGAGGATTGGTTTAGCAGAGCAAACTCTTCTTGTTGCTCTTGGACAAGCTGCTGTTTATGCTGAAGAGCATTCAAAGCCTCCTTCAGATGTTCAATCTCCACTAGAAGAGGCAGGGAAGATTGTGAAACAAGTATACTCTGTGCTTCCTGTTTATGATAAGATAATCCCTGCTCTGCTCAGTGGTGGTGTATGGGATCTATCAAAAACCTGCAACTTCACACCAGGTGTTCCTATTGGACCTATGCTGGCGAAGCCAACAAAAGGGGTATCAGAGATTATAGATAAATTTCAAGATATGGTCTTTACTTCTGAGTACAAATATGATGGAGAGCGTGCTCAAATTCATTACATGGAGAATGGTTCAGTTGAGATTTACAGTCGAAATGCTGAACGGAACACTGGGAAATACCCTGATGTTGTTGATGCCATGGCTAGGTTCAAGAAGCCATCTGTGAACTCTTTTGTTTTGGATTGTGAAATTGTTGCATACGATCGTGAGAAACAGAAGATTCTTCCCTTTCAGATACTTAGCACCCGTGCTCGTAAAAACGTTGTAATGAGTGACATCAAGGTTGACGTTTGCATCTTCGCTTTTGACATGTTGTATCTGGATGGGAAGCCACTTCTTCAAGAGCAGCTTAACACCCGTAGAAAGCATCTTTATGATTCCTTTGTGGAAGAACCTGGGTTTTTTCACTTTGCTACAACACTCACATCAAGTGATCTTGAAGAAATTCAGAAGTTCCTTGAAGCTGCTGTCAATGCCAGTTGCGAGGGGTTAATAATCAAAACATTGGACAGAGAGGCTACTTATGAGCCCTCAAAGAGGTCTAATAACTGGCTTAAATTGAAAAAGGATTACATGGAGAGTGTTGGGGATTCTCTGGATCTGGTGCCCATTGCAGCATTCCATGGCCGTGGAAAAAGAACAGGTGTTTATGGAGCTTTTCTCCTAGCTTGTTATGATTGTGACAAGGAGGAATTCCAAACCATATGCAAAATAGGTACTGGATTTTCTGAAGCTGTGCTTGAAGAACGATCTTCCAGCCTTCGTTCTAAAGTGATTCCCAACCCAAAGCCATACTATCGATACGGAGATACCCTCACCCCGGACGTATGGTTTGAACCCTCTGAGGTGTGGGAGGTCAAAGCAGCTGACTTGACCATCAGTCCTGTTCACCGTGCTGCAGTTGGTACAGTTGATCCAGAGAAGGGAATTTCACTCCGATTTCCACGCCTGCTTCGTGTTAGAGAAGACAAGACTCCCGAGGAAGCAACATCATCTGATCAGGTGGCTGAAATGTACATTTCTCAAGCAAACGCCTCTAACAAGACGAGCAACAATCAAGATGAAATGGAAGAAGAGGACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_94603.p1 GENE.R_Transcript_94603~~R_Transcript_94603.p1 ORF type:complete len:797 (+),score=197.14,DNA_ligase_A_M|PF01068.17|1.5e-63,DNA_ligase_A_N|PF04675.10|3.8e-40,DNA_ligase_A_C|PF04679.11|3.6e+03,DNA_ligase_A_C|PF04679.11|1.8e-24 R_Transcript_94603:515-2905(+)
MLRLTFTFRPIINNTTLKFKLPLHSSSITLPKTFTLSPKPRTLTPLLAMSSLPSAFDALMSGARQAAKKKSQNPIPPSPKKRKSPDPIQPNSENPKSISDSPQNPQSSNLSRKSPDPIQPKSENPKPTSDSPQNPFSKKPKIVAAVLNVDEFVGQLKTKPANFDPKKAVWWEHGDKVPFLFLARALDLIKDESGRIAITDITCNVLRAVIKTTPDDLLGVVYLLANKIAPAHEGVELGIGDASLIKALAEACGATEAVVKKSYKVLGDLGDVAKEIRSKQSMMRQPPPLTVAKVFSTFQQIAKASGKDSQERKKSLIKSLLVAAKDCEPVYLMRLLQSKLRIGLAEQTLLVALGQAAVYAEEHSKPPSDVQSPLEEAGKIVKQVYSVLPVYDKIIPALLSGGVWDLSKTCNFTPGVPIGPMLAKPTKGVSEIIDKFQDMVFTSEYKYDGERAQIHYMENGSVEIYSRNAERNTGKYPDVVDAMARFKKPSVNSFVLDCEIVAYDREKQKILPFQILSTRARKNVVMSDIKVDVCIFAFDMLYLDGKPLLQEQLNTRRKHLYDSFVEEPGFFHFATTLTSSDLEEIQKFLEAAVNASCEGLIIKTLDREATYEPSKRSNNWLKLKKDYMESVGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDCDKEEFQTICKIGTGFSEAVLEERSSSLRSKVIPNPKPYYRYGDTLTPDVWFEPSEVWEVKAADLTISPVHRAAVGTVDPEKGISLRFPRLLRVREDKTPEEATSSDQVAEMYISQANASNKTSNNQDEMEEED*

Click here to download the sequence:
Link to NCBI Protein BLAST