Transcript Information: R_Transcript_94661.p1


Annotated TAIR IDAT5G06550.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), F-box domain, Skp2-like (InterPro:IPR022364), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT1G78280.1); Has 1762 Blast hits to 1747 proteins in 292 species: Archae - 0; Bacteria - 297; Metazoa - 877; Fungi - 168; Plants - 221; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:2001246-2003068 | Reverse length=502
E-Value9.2E-267
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 114.687418402632
Replicate 29.2188057383388
Replicate 311.412317297008
Condition 2: 8 Hour
Replicate 110.092740032019
Replicate 29.6977301175034
Replicate 311.678186761145
Condition 3: 24 Hour
Replicate 116.086922268875
Replicate 213.952520409272
Replicate 316.082363658831


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_94661.p1 GENE.R_Transcript_94661~~R_Transcript_94661.p1 ORF type:5prime_partial len:558 (+),score=116.66,Cupin_8|PF13621.2|1.4e-20,JmjC|PF02373.18|1e-11,F-box-like|PF12937.3|2.2e-05,F-box-like|PF12937.3|4.1e+03,F-box|PF00646.29|4.4e+03,F-box|PF00646.29|7.7e-06 R_Transcript_94661:2-1675(+)
AGTGAGGCAGTAAGCCTGCGAACCCTCCTCCGTCTTAGGGGCGTAAGACATAAACACGGCCCCTTTCTAAGTCTCCACGCCGCCTCCTTAACCCCTTCAAAAATGTTAAGGTTCGGAAAACTGTTAGCTAAACCCCATAAAAGAAAAACCAAAAACAAAAATAACAAGACCAGAACAAAAAGAACCAGAATTCCTGTTTCCCAAGAAGACAATGGCATCATTCTTTCCGATAATCAACAACCCATTAATCATCATTCAGATGAAGAAGAAGCAGAAGCCGAAGCAGAAGAAGAAGGTTTCAGCTTGAAAACCACAGCCCCATCAAACAGCCATGGAGTACAACCACTGGGAAACCTTTACCTTTCCCCAAAATGCCATAACTCAAGGGACACAGGCTTAGGTAACCTTAAACTCCTCACTGATGAACTTGTTCTTGAAATTTTAGCACTTTTAGATGCTACCCATTTGGGTATTTTGTCTACTGTTAGCAAATCATTTTATATATTCTGTACCCATGATCCCCTTTGGAGGAATTTAGTGTTGGAATCTCTTAAAGGTGGGTTTTTATATAATGGGTCATGGAGAATTACTTATATTTCTGCTCATTTCCCTCGTTTTAATGTTTCAAGAATTGGGTATCAAGGGTTTTCCATTAGGGACTTTTATTCTGATTATTTGTTCCAAAGTTGGTTGTGTGCTAATCTTGAGATGAAACCTGAGTGGTTACAAAGGGATAATATACAAAGAAGGAGGGGGGTTTCTGTTGAGGAATTTGTGTTGAATTTTGAGGAACCTAATAAGCCTGTTTTGTTGGAAGGGTGTTTGGATAATTGGGTTGCAATGGGGAAATGGGATAGGGATTATTTGATCAAGGAATGTGGGGATGTTAAGTTTGCTGTTGGTCCTGTGGAAATGAAGCTTGAGGACTACTTTAGGTATTCTGATTTGACAAGGGAAGAAAGACCGTTGTATTTGTTTGATCCAAAGTTTGCGGAGAAGGTTCCGAGCTTGGGTAAGGAGTATGAAGTGCCTGTGTACTTTAGAGAGGATTTGTTTTTGGTTTTGGGTGACAAGAGGCCTGATTATCGATGGGTTATCATTGGTCCTGCTGGGTCTGGTTCGTCTTTTCACATTGATCCGAATTCAACATCGGCTTGGAATGCTGTGATTAAGGGGTCTAAGAAGTGGGTCATGTTCCCTCCAGATGTTGTACCTCCTGGAGTCCATCCTAGCCCTGATGGTGCAGAGGTTGCTTGTCCAGTTTCTATAATTGAATGGTTCATGAATTTTTATGGAGCTAGTAAGGATTGGACGAAGAGACCTATTGAATGTGTTTGTAAAGCTGGTGAAGTTGTCTTTGTGCCTAATGGGTGGTGGCATTTGGTTATCAACCTAGAGGAGTCGATTGCTATCACACAGAATTATGTTAGCAGGAGGAATTTGCTGAAGGTGTTGGAGTTTCTGAAGAAGCCAAATGCGAGTGAACTTGTATCTGGAACAAGGGACCGTGTGAATTTGCATAAGAAGTTCATAAAGGCAATTGAGGCTTCATTTCCGGGGACTATTGATCAGCTGATGAGAAAAGCTGAAGAGAGAAGTACGGAGCAGAAGAAGCGTGCATTTTGGGACTCTGTGACAGATTCAAATGCTGGTGCTTTCAAATTTTCTTTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_94661.p1 GENE.R_Transcript_94661~~R_Transcript_94661.p1 ORF type:5prime_partial len:558 (+),score=116.66,Cupin_8|PF13621.2|1.4e-20,JmjC|PF02373.18|1e-11,F-box-like|PF12937.3|2.2e-05,F-box-like|PF12937.3|4.1e+03,F-box|PF00646.29|4.4e+03,F-box|PF00646.29|7.7e-06 R_Transcript_94661:2-1675(+)
SEAVSLRTLLRLRGVRHKHGPFLSLHAASLTPSKMLRFGKLLAKPHKRKTKNKNNKTRTKRTRIPVSQEDNGIILSDNQQPINHHSDEEEAEAEAEEEGFSLKTTAPSNSHGVQPLGNLYLSPKCHNSRDTGLGNLKLLTDELVLEILALLDATHLGILSTVSKSFYIFCTHDPLWRNLVLESLKGGFLYNGSWRITYISAHFPRFNVSRIGYQGFSIRDFYSDYLFQSWLCANLEMKPEWLQRDNIQRRRGVSVEEFVLNFEEPNKPVLLEGCLDNWVAMGKWDRDYLIKECGDVKFAVGPVEMKLEDYFRYSDLTREERPLYLFDPKFAEKVPSLGKEYEVPVYFREDLFLVLGDKRPDYRWVIIGPAGSGSSFHIDPNSTSAWNAVIKGSKKWVMFPPDVVPPGVHPSPDGAEVACPVSIIEWFMNFYGASKDWTKRPIECVCKAGEVVFVPNGWWHLVINLEESIAITQNYVSRRNLLKVLEFLKKPNASELVSGTRDRVNLHKKFIKAIEASFPGTIDQLMRKAEERSTEQKKRAFWDSVTDSNAGAFKFSF*

Click here to download the sequence:
Link to NCBI Protein BLAST