Transcript Information: R_Transcript_94664.p1


Annotated TAIR IDAT5G06550.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), F-box domain, Skp2-like (InterPro:IPR022364), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT1G78280.1); Has 1762 Blast hits to 1747 proteins in 292 species: Archae - 0; Bacteria - 297; Metazoa - 877; Fungi - 168; Plants - 221; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:2001246-2003068 | Reverse length=502
E-Value2E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.9070257713885
Replicate 22.1936433270759
Replicate 32.0513496354763
Condition 2: 8 Hour
Replicate 11.4618426834176
Replicate 21.1681057678231
Replicate 32.0318967112374
Condition 3: 24 Hour
Replicate 12.2272499549265
Replicate 22.4688722638706
Replicate 34.0835269938241


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_94664.p1 GENE.R_Transcript_94664~~R_Transcript_94664.p1 ORF type:5prime_partial len:134 (+),score=11.18 R_Transcript_94664:2-403(+)
AGTGAGGCAGTAAGCCTGCGAACCCTCCTCCGTCTTAGGGGCGTAAGACATAAACACGGCCCCTTTCTAAGTCTCCACGCCGCCTCCTTAACCCCTTCAAAAATGTTAAGGTTCGGAAAACTGTTGGCAAAACCCCATAAAAGAAAAACCAAGAACAAAAAAAACAAGACCAGAACAAAAAGAACCAGAATTCCTATTTCCCAAGAAGAAAATGGTACCATTCTTTCCAATAATCAACAACCCATTAATCATCATTCAGATGAAGAAGAAGAAGAAGAAGAAGGTTTCAGCTTGAAAACCACAGCCCCATCAAACAGCCATGGAGTACAACCACTGGGAAACCTTTACCTTTCCCCAAAATGCCATAACTCAAGGGACACAGGCTTAGGAGGAATTTGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_94664.p1 GENE.R_Transcript_94664~~R_Transcript_94664.p1 ORF type:5prime_partial len:134 (+),score=11.18 R_Transcript_94664:2-403(+)
SEAVSLRTLLRLRGVRHKHGPFLSLHAASLTPSKMLRFGKLLAKPHKRKTKNKKNKTRTKRTRIPISQEENGTILSNNQQPINHHSDEEEEEEEGFSLKTTAPSNSHGVQPLGNLYLSPKCHNSRDTGLGGIC*

Click here to download the sequence:
Link to NCBI Protein BLAST