Transcript Information: R_Transcript_94980.p1


Annotated TAIR IDAT1G47490.1
Annotated Gene NameRNA-binding protein 47C
Annotated Gene Symbol(s)ATRBP47C, RBP47C
Annotation TypeOrtholog
Chromosome Positionchr1:17424801-17427182 | Forward length=432
E-Value9.5E-173
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 191.647065735996
Replicate 294.26349532448
Replicate 387.489345949703
Condition 2: 8 Hour
Replicate 184.931337840576
Replicate 2108.58491051152
Replicate 3111.23801168148
Condition 3: 24 Hour
Replicate 1125.24625723177
Replicate 2125.172254646
Replicate 3105.59958046584


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_94980.p1 GENE.R_Transcript_94980~~R_Transcript_94980.p1 ORF type:5prime_partial len:382 (+),score=64.00,RRM_1|PF00076.18|5.2e-12,RRM_1|PF00076.18|7.6e-16,RRM_1|PF00076.18|4.1e-19,RRM_6|PF14259.2|3.3e-05,RRM_6|PF14259.2|9.2e-06,RRM_6|PF14259.2|1.6e-15,RRM_5|PF13893.2|0.4,RRM_5|PF13893.2|3.2,RRM_5|PF13893.2|1.3e-09,RRM_7|PF16367.1|2e+03,RRM_7|PF16367.1|9.9,RRM_7|PF16367.1|0.006,Nup35_RRM_2|PF14605.2|8.6e-06 R_Transcript_94980:1-1146(+)
CCTCATCCCCATCACCATCACCAACAACATCGAAACAACAACAATAATAACCACCACCATAGCAATAATAATAATAATAACAACAGTCATAATAATAATGGCAACAATAATAACAGTAATAATAATGATGGGTCAAGTGGTGAAAATAAGACCATTTGGGTCGGTGACTTGCATCATTGGATGGATGAGCTTTATCTCAGTAACTGTTTCTCTCGTGCCGGCGAGATAGCATCTGTAAAAGTTATCCGCAATAAACAGACTGGAGCATCGGAAGGATATGGATTTGTTGAATTCTTTACTCGTGCTAATGCCGAGAAGGTTCTGCAGACACACGCAAGCATGTTGATGCCTAATACAGAGCAGCCTTTCCGTCTGAACTGGGCCACTTTCAGCATGGGCGATAAGCGCACAGACAATGGTTCTGATCTGTCTATATTCGTTGGGGATTTAGCAGCTGATGTTACTGATACCATGTTGCATGAATTATTTGCCAACAAATACCCTTCTGTTAAGGCTGCAAAAGTTGTCATTGATGCTAACACCGGTCGATCAAAAGGCTATGGTTTTGTGAGGTTTGGGGATGACAGTGAGAGGACACAAGCCATGACTGAAATGAACGGTGTCTATTGTTCAACTAGGCCAATGCGAATTGGTCCTGCTACTCCTCGGAAATCTCTAGGATATCAACAAGGTGGATATGCATCAAATGGTAATGGCCAAGGCGCACAATCTGATGGAGATTCATCAAACACAACAATATTTGTTGGAGGGCTTGATCCTAGCGTCACAGATGAGGAACTGAGAGAGCCCTTCTCCCAATACGGTGAAATAGTTTCTGTTAAAATCCCAGTTGGGAAAGGATGTGGATTTGTTCAATTTGCAAACAGAGGCAATGCGGAAGAGGCTTTGAATAAGTTAAATGGCACTGTAATAGGCAAGCAAACCGTGCGTCTCTCCTGGGGCCGCAACCCAGCAAATAAGCAGTCAAGAGGTGACTATGCAAATCAGTGGAACGGAGGGTACTATGGAGGACACATGTACGATGGCTATGGATATGCACTACCTCACCCTCATGATCCAAGCATGTATGCAGCAGCAGCTTATGGGACATACCCCGTCTATGGCAATCAGCAGCAAGTAAGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_94980.p1 GENE.R_Transcript_94980~~R_Transcript_94980.p1 ORF type:5prime_partial len:382 (+),score=64.00,RRM_1|PF00076.18|5.2e-12,RRM_1|PF00076.18|7.6e-16,RRM_1|PF00076.18|4.1e-19,RRM_6|PF14259.2|3.3e-05,RRM_6|PF14259.2|9.2e-06,RRM_6|PF14259.2|1.6e-15,RRM_5|PF13893.2|0.4,RRM_5|PF13893.2|3.2,RRM_5|PF13893.2|1.3e-09,RRM_7|PF16367.1|2e+03,RRM_7|PF16367.1|9.9,RRM_7|PF16367.1|0.006,Nup35_RRM_2|PF14605.2|8.6e-06 R_Transcript_94980:1-1146(+)
PHPHHHHQQHRNNNNNNHHHSNNNNNNNSHNNNGNNNNSNNNDGSSGENKTIWVGDLHHWMDELYLSNCFSRAGEIASVKVIRNKQTGASEGYGFVEFFTRANAEKVLQTHASMLMPNTEQPFRLNWATFSMGDKRTDNGSDLSIFVGDLAADVTDTMLHELFANKYPSVKAAKVVIDANTGRSKGYGFVRFGDDSERTQAMTEMNGVYCSTRPMRIGPATPRKSLGYQQGGYASNGNGQGAQSDGDSSNTTIFVGGLDPSVTDEELREPFSQYGEIVSVKIPVGKGCGFVQFANRGNAEEALNKLNGTVIGKQTVRLSWGRNPANKQSRGDYANQWNGGYYGGHMYDGYGYALPHPHDPSMYAAAAYGTYPVYGNQQQVS*

Click here to download the sequence:
Link to NCBI Protein BLAST