Transcript Information: R_Transcript_95242.p1


Annotated TAIR IDAT5G40190.1
Annotated Gene NameRNA ligase/cyclic nucleotide phosphodiesterase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16069298-16069849 | Reverse length=183
E-Value1.4E-100
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 119.140942839002
Replicate 227.124950267542
Replicate 323.402018409042
Condition 2: 8 Hour
Replicate 115.882723209024
Replicate 218.009575104522
Replicate 317.268559292909
Condition 3: 24 Hour
Replicate 120.475882122006
Replicate 221.339953196829
Replicate 322.12432852135


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_95242.p1 GENE.R_Transcript_95242~~R_Transcript_95242.p1 ORF type:complete len:185 (+),score=22.61,2_5_RNA_ligase2|PF13563.2|5.8e-09 R_Transcript_95242:444-998(+)
ATGTCACAAGGCTATGCAATTGAACTTTACTTCGATCCAGCCCTAGAAAACCAAGTCCTGAAAGCATGGAATGTTCTAGCTCGTCGCCAAATCAGTACCCAACTTATAGAAATTGAGTCTCGTCCCCACATAACCCTCTTTTCAACCCCATCTTTCATTGACCCTTCAAAGCTTGAACCTTTGATCAAATCATTTGCTCAAAAACAAGACCCTTTACTTCTCAATTTCTCCTCAATTGGGTCCTTTCCTAATGACAGTAATACCCTTTTCTTATCTCCAACCCCCACATTGTCTTTGCTCCAGTTTCAGACCCAACTTTGTGATCTCCTCAAGAAGGAAGCCACCATTGAAATTGGGGATGAATTCCGGGTCGATTCGTGGGTCCCCGTTTGCCCGGTTGCTCAGGATGTCCCTAAGAATAGGATGGCTGAAGCTTTCAGTGTTTTGAGGGACCTCAAGTTGCCTGTTCATGGCTATGCCATGGATATTGGCTTGGTCGAGTTTTCGCCAGTCCGAGAGTTGTTCTCCTTCATGCTTGGTAACACGGTAGAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_95242.p1 GENE.R_Transcript_95242~~R_Transcript_95242.p1 ORF type:complete len:185 (+),score=22.61,2_5_RNA_ligase2|PF13563.2|5.8e-09 R_Transcript_95242:444-998(+)
MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPSFIDPSKLEPLIKSFAQKQDPLLLNFSSIGSFPNDSNTLFLSPTPTLSLLQFQTQLCDLLKKEATIEIGDEFRVDSWVPVCPVAQDVPKNRMAEAFSVLRDLKLPVHGYAMDIGLVEFSPVRELFSFMLGNTVE*

Click here to download the sequence:
Link to NCBI Protein BLAST