Transcript Information: R_Transcript_95877.p1


Annotated TAIR IDAT2G18940.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:8203873-8206341 | Reverse length=822
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.9727032666153
Replicate 22.4207499303497
Replicate 33.0452486451356
Condition 2: 8 Hour
Replicate 13.8313176917454
Replicate 23.8934241323476
Replicate 34.5699349091327
Condition 3: 24 Hour
Replicate 13.51119404659
Replicate 23.6326308760951
Replicate 34.5320423822282


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_95877.p1 GENE.R_Transcript_95877~~R_Transcript_95877.p1 ORF type:complete len:850 (+),score=187.12,PPR_2|PF13041.2|4.2e+03,PPR_2|PF13041.2|6.6e-12,PPR_2|PF13041.2|1.1e-09,PPR_2|PF13041.2|0.0032,PPR_2|PF13041.2|1.5e-11,PPR_2|PF13041.2|7e-10,PPR_2|PF13041.2|5e-14,PPR_2|PF13041.2|1.1e-11,PPR_2|PF13041.2|4.9e-10,PPR_2|PF13041.2|1.6e-06,PPR_2|PF13041.2|5.8e-12,PPR_2|PF13041.2|56,PPR_2|PF13041.2|4.9e-11,PPR_2|PF13041.2|1.1e-12,PPR_2|PF13041.2|3.7e-14,PPR_2|PF13041.2|1.2e-12,PPR|PF01535.16|8.4e+02,PPR|PF01535.16|7.1e-06,PPR|PF01535.16|0.00064,PPR|PF01535.16|0.00011,PPR|PF01535.16|5.6e-08,PPR|PF01535.16|0.1,PPR|PF01535.16|6.5e-09,PPR|PF01535.16|0.0013,PPR|PF01535.16|3.1e-05,PPR|PF01535.16|3.2e-06,PPR|PF01535.16|1.1e-05,PPR|PF01535.16|1.1e+02,PPR|PF01535.16|3.5e+03,PPR|PF01535.16|0.00075,PPR|PF01535.16|1.1e-05,PPR|PF01535.16|1.7e-08,PPR|PF01535.16|0.0023,PPR|PF01535.16|0.00055,PPR_1|PF12854.3|0.091,PPR_1|PF12854.3|0.0047,PPR_1|PF12854.3|2e-05,PPR_1|PF12854.3|7.7e-05,PPR_1|PF12854.3|0.02,PPR_1|PF12854.3|1.5e-09,PPR_1|PF12854.3|0.0025,PPR_1|PF12854.3|0.04,PPR_1|PF12854.3|4.1e-05,PPR_1|PF12854.3|0.034,PPR_1|PF12854.3|34,PPR_1|PF12854.3|0.0045,PPR_1|PF12854.3|3.3e-06,PPR_1|PF12854.3|1e-11,PPR_1|PF12854.3|0.017,PPR_1|PF12854.3|1.5e-06,PPR_3|PF13812.2|0.002,PPR_3|PF13812.2|0.00033,PPR_3|PF13812.2|0.29,PPR_3|PF13812.2|0.00019,PPR_3|PF13812.2|0.36,PPR_3|PF13812.2|7.5e-08,PPR_3|PF13812.2|5.4,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|0.00066,PPR_3|PF13812.2|0.00015,PPR_3|PF13812.2|5.4e+02,PPR_3|PF13812.2|1.8e+02,PPR_3|PF13812.2|0.7,PPR_3|PF13812.2|0.028,PPR_3|PF13812.2|9.8e-06,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|1.2e+02,ECSIT|PF06239.7|5,ECSIT|PF06239.7|1.2e+03,ECSIT|PF06239.7|6.9e+02,ECSIT|PF06239.7|0.93,ECSIT|PF06239.7|2.1e+02,ECSIT|PF06239.7|5e+02,ECSIT|PF06239.7|33,ECSIT|PF06239.7|1.9,ECSIT|PF06239.7|5.7e+02,TPR_12|PF13424.2|1.6e+04,TPR_12|PF13424.2|6.3,TPR_12|PF13424.2|2.1e+02,TPR_12|PF13424.2|2.2e+02,TPR_12|PF13424.2|94,TPR_12|PF13424.2|6.8e+02,TPR_12|PF13424.2|0.41,TPR_12|PF13424.2|2.6e+02,TPR_7|PF13176.2|2.5e+02,TPR_7|PF13176.2|2.5,TPR_7|PF13176.2|3.7e+03,TPR_7|PF13176.2|1.2e+03,TPR_7|PF13176.2|7.2,TPR_7|PF13176.2|1.4e+03 R_Transcript_95877:331-2880(+)
ATGGAAGGCACCATATTTCCAAACAGGCCAACATTGCCAACTCAATCAACAAAACCAACAACACAACAACCAAACATGGCCTTAAAGTTCAACTCTTCAACATTGCCCTTACCCCCACAACAACCACAAAACCCTCCTTCTCTTGCTATAGACTCTCTTCTTCAGCATCTTCTTCACCTTTCTTCAACTTCAAGCAATACCCATTTCCCTAAACTCATCAAATCCTCACAAAATTCCAGAACTACCCTTTTGCATTCACTTCCTATATCTTCACTTGACTCTATTACTCAGCCTATTGTGAATGGACATTCTTCAATTTCAAGCTCTCAACTTCATGTTAAAGATAAGGTTTTTATTCACTCATGTGATGATGGGTCACTTGATTTCTTGTCTGATAAAAGTAAGCTTATGTTGAATTCTATATTGGAAAGACCCTTATCTAGTTTGAATGCTTTCTTTGATTCTGTGAAGCTTGATTTGCTTGAAGTTGATTTGTTTAGTTTATTGAAAGGCTTAGATGTTTTGGGTAATTGGGAGAAGGCTGTTTTGTTGTTTGAATGGAGTTTTGTGAACTTGAGGGCTAGTCATAGGAAGAAAATGGATGATCAGGTTGTTGAGTTAATGGCTAGGATTTTAGGTAAGGAGTCACAGCATTCAATTGCAGCTAAATTGTTTGATGTTATTCCTCTTGAAGAGTACTCTTTAGATATTAGAGCTTACACTTCTATTCTTCATGCCTATGCTCGAACGGGCAAGTATGAGAAAGCGGTTGCCATATTCGAGAACTTGAAGGAGAAGGGTCTTTCCCCTACTTTGGTCACTTACAATGTAATGCTGGATGTTTATGGGAAAATGGGTAGGTCTTGGGAGAAGGTTTTAGGTCTTCTAGAGGAGATGACAAGTAAAGGGCTCAAGTTTGATGAGTTCACTTGCAGTACAGTGATTGCTGCTTGTGGAAGGGAGGGTTTGTTAGATGAAGCAAGGAAATTCTTTTCCCAGTTGAAGTCACAGGGTTATGTACCGGGCACTGTTACATATAACTCTTTACTTCAACTGTTTGGGAAAGCCGGGGTTTATTCTGAGGCTTTGAGTATCTTGAAAGAAATGGAGGAGAAAGGTTGTCCTGCTGATTCTGTTACTTATAATGAATTGGTTGCTACTTATGTGAGAGCAGGTTTCCTTGAAGAAGGAGCTGCTGTGATTGACACCATGGCTCAGAAAGGGATTATGCCAAATGCAATTACGTATACTACGATTATAGATGCCTATGGGAAAGCTGGAAAGGAAGAGAAGGCTCTGGCGTTGTTTAGGCATATGAAAGATTCAGGTTGTGTTCCTAATGTTTGTACATATAATGCTATCCTTGGGATGTTGGGGAAGAAGTCAAGATCAGAGGAGATGATAGAGATATTGTGTGATATGAAAGTATCTGGATGTCCTCCTAATCGCATCACATGGAACACGATGCTTGCCATGTGTGGTAAGACGGGCATGGAGAAGTATGTGAACCAAGTTTTTCAGGAGATGAAGCGATGTGGTTTTGAGCCTGATAGGGACACTTTCAACACTTTGATTAGTGCATATGGCCGGTGTGGATCAAGGATAGATGCTGCCAAAATGTTCAAGGAGATGATGAAAGCAGGGTTCAGCCCCTGTGTCACGACCTACAATGCATTTTTGAATGTACTAGCTAGGAAGGGAGATTGGAGAGCTGCAGAATCAATCATTCGGGACATGAAGAGTAAGGGGTTTAAACCTAATGAGACTTCCTTTTCCTTGGTGCTTCAGTGTTATGCCAAGGGAGGAAATTTGAAGGGTATTAAAAACTTAGAGAAAGACATCTACCAAGGACATATCTTTCCGACATGGATGCTTCTAAGAAGCCTCGTTCTAGCAAATTTCAAGTGTAGAGCATTATCAGGGATGGAGAGGGCATTCAAGGAGCTGCAAAAGAGTGGATACAAACCGGACTTGGTTGTATACAACTCGATGCTCTCGATCTTTGCTAGGAACAAAATGTATGACCGTGCACATGAAATACTGCACTTGATTCAGGAGAGCAAATTGCAGCCAGATCTTGTGACCTACAATAGCTTGATGGACATGTATGCGAGATCAGGTGAATGTTGGAAGGCAGAAGAGCTTCTACGAAAGCTCCTAAAAACTGGTGGAAAGCCAGATCTTGTATCATATAACACAGTGATAAAAGGGTTTTGCCGGCAAGGGCTTATGCAGGAAGCGATAAAGATTATGTCAGAGATGACAACTAGAGGGATTCGACCATGCATTGTCACCTTCAACACATTTGTGGCTGGCTATGCAGGGAGAGGGATGTTCTCTGAGGCTGATGAAGTAATAAGCTATATGATTCAGCACAATTGTAAGCCAAATGAGTTGACTTACAAGACTGTTGTGGATGGTTATTGTAAAGCAAAGAAGTACAGAGAAGCTCTTGGCTTTGTTTCCAAAATCAAGGAGATAGATCATTCTTTCGATGATGAATCTTTATATCGCCTTTCTTCTCGTATTAGGCAGGATGTGCAGTTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_95877.p1 GENE.R_Transcript_95877~~R_Transcript_95877.p1 ORF type:complete len:850 (+),score=187.12,PPR_2|PF13041.2|4.2e+03,PPR_2|PF13041.2|6.6e-12,PPR_2|PF13041.2|1.1e-09,PPR_2|PF13041.2|0.0032,PPR_2|PF13041.2|1.5e-11,PPR_2|PF13041.2|7e-10,PPR_2|PF13041.2|5e-14,PPR_2|PF13041.2|1.1e-11,PPR_2|PF13041.2|4.9e-10,PPR_2|PF13041.2|1.6e-06,PPR_2|PF13041.2|5.8e-12,PPR_2|PF13041.2|56,PPR_2|PF13041.2|4.9e-11,PPR_2|PF13041.2|1.1e-12,PPR_2|PF13041.2|3.7e-14,PPR_2|PF13041.2|1.2e-12,PPR|PF01535.16|8.4e+02,PPR|PF01535.16|7.1e-06,PPR|PF01535.16|0.00064,PPR|PF01535.16|0.00011,PPR|PF01535.16|5.6e-08,PPR|PF01535.16|0.1,PPR|PF01535.16|6.5e-09,PPR|PF01535.16|0.0013,PPR|PF01535.16|3.1e-05,PPR|PF01535.16|3.2e-06,PPR|PF01535.16|1.1e-05,PPR|PF01535.16|1.1e+02,PPR|PF01535.16|3.5e+03,PPR|PF01535.16|0.00075,PPR|PF01535.16|1.1e-05,PPR|PF01535.16|1.7e-08,PPR|PF01535.16|0.0023,PPR|PF01535.16|0.00055,PPR_1|PF12854.3|0.091,PPR_1|PF12854.3|0.0047,PPR_1|PF12854.3|2e-05,PPR_1|PF12854.3|7.7e-05,PPR_1|PF12854.3|0.02,PPR_1|PF12854.3|1.5e-09,PPR_1|PF12854.3|0.0025,PPR_1|PF12854.3|0.04,PPR_1|PF12854.3|4.1e-05,PPR_1|PF12854.3|0.034,PPR_1|PF12854.3|34,PPR_1|PF12854.3|0.0045,PPR_1|PF12854.3|3.3e-06,PPR_1|PF12854.3|1e-11,PPR_1|PF12854.3|0.017,PPR_1|PF12854.3|1.5e-06,PPR_3|PF13812.2|0.002,PPR_3|PF13812.2|0.00033,PPR_3|PF13812.2|0.29,PPR_3|PF13812.2|0.00019,PPR_3|PF13812.2|0.36,PPR_3|PF13812.2|7.5e-08,PPR_3|PF13812.2|5.4,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|0.00066,PPR_3|PF13812.2|0.00015,PPR_3|PF13812.2|5.4e+02,PPR_3|PF13812.2|1.8e+02,PPR_3|PF13812.2|0.7,PPR_3|PF13812.2|0.028,PPR_3|PF13812.2|9.8e-06,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|1.2e+02,ECSIT|PF06239.7|5,ECSIT|PF06239.7|1.2e+03,ECSIT|PF06239.7|6.9e+02,ECSIT|PF06239.7|0.93,ECSIT|PF06239.7|2.1e+02,ECSIT|PF06239.7|5e+02,ECSIT|PF06239.7|33,ECSIT|PF06239.7|1.9,ECSIT|PF06239.7|5.7e+02,TPR_12|PF13424.2|1.6e+04,TPR_12|PF13424.2|6.3,TPR_12|PF13424.2|2.1e+02,TPR_12|PF13424.2|2.2e+02,TPR_12|PF13424.2|94,TPR_12|PF13424.2|6.8e+02,TPR_12|PF13424.2|0.41,TPR_12|PF13424.2|2.6e+02,TPR_7|PF13176.2|2.5e+02,TPR_7|PF13176.2|2.5,TPR_7|PF13176.2|3.7e+03,TPR_7|PF13176.2|1.2e+03,TPR_7|PF13176.2|7.2,TPR_7|PF13176.2|1.4e+03 R_Transcript_95877:331-2880(+)
MEGTIFPNRPTLPTQSTKPTTQQPNMALKFNSSTLPLPPQQPQNPPSLAIDSLLQHLLHLSSTSSNTHFPKLIKSSQNSRTTLLHSLPISSLDSITQPIVNGHSSISSSQLHVKDKVFIHSCDDGSLDFLSDKSKLMLNSILERPLSSLNAFFDSVKLDLLEVDLFSLLKGLDVLGNWEKAVLLFEWSFVNLRASHRKKMDDQVVELMARILGKESQHSIAAKLFDVIPLEEYSLDIRAYTSILHAYARTGKYEKAVAIFENLKEKGLSPTLVTYNVMLDVYGKMGRSWEKVLGLLEEMTSKGLKFDEFTCSTVIAACGREGLLDEARKFFSQLKSQGYVPGTVTYNSLLQLFGKAGVYSEALSILKEMEEKGCPADSVTYNELVATYVRAGFLEEGAAVIDTMAQKGIMPNAITYTTIIDAYGKAGKEEKALALFRHMKDSGCVPNVCTYNAILGMLGKKSRSEEMIEILCDMKVSGCPPNRITWNTMLAMCGKTGMEKYVNQVFQEMKRCGFEPDRDTFNTLISAYGRCGSRIDAAKMFKEMMKAGFSPCVTTYNAFLNVLARKGDWRAAESIIRDMKSKGFKPNETSFSLVLQCYAKGGNLKGIKNLEKDIYQGHIFPTWMLLRSLVLANFKCRALSGMERAFKELQKSGYKPDLVVYNSMLSIFARNKMYDRAHEILHLIQESKLQPDLVTYNSLMDMYARSGECWKAEELLRKLLKTGGKPDLVSYNTVIKGFCRQGLMQEAIKIMSEMTTRGIRPCIVTFNTFVAGYAGRGMFSEADEVISYMIQHNCKPNELTYKTVVDGYCKAKKYREALGFVSKIKEIDHSFDDESLYRLSSRIRQDVQF*

Click here to download the sequence:
Link to NCBI Protein BLAST