Transcript Information: R_Transcript_96100.p1


Annotated TAIR IDAT5G51140.2
Annotated Gene NamePseudouridine synthase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:20784103-20786793 | Reverse length=410
E-Value2E-170
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.7918049183242
Replicate 25.7537938640817
Replicate 36.0020057643765
Condition 2: 8 Hour
Replicate 17.475252039183
Replicate 26.7190149763178
Replicate 36.9377550207729
Condition 3: 24 Hour
Replicate 13.9734666355642
Replicate 24.7185529838014
Replicate 35.5771555211806


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_96100.p1 GENE.R_Transcript_96100~~R_Transcript_96100.p1 ORF type:5prime_partial len:416 (+),score=65.35,PseudoU_synth_2|PF00849.18|2.7e-26 R_Transcript_96100:3-1250(+)
TCACTAAAACCTATCCCGACGATCATGTTAAAAATGAAGCGAAAGAGAAACCAAGAGGAACAACAACTTGACCACCTTCAACAACCCACCAGTGCCACCACCACCACCACCACCACCACCACCACCGGCACCATGGACATTGTTTGGCAAACCCCAGCTAATCCTCCCCTTCGCGAAGACTACATCCTCCACAAAGGAAGGCGCTATGTACGGCCTTACTACTTCGAGTTCATCTGCCATGTGAAAAATCGTTGGCCTGGTAAAACTATAGTTGATTTATTCGCTGACGAATTCAAAGGCCGGCCCTATGATTACTATGTTACAGCTGTCAAATGTGGGAGAATACAGGTTGATGGACAAAATGTTTCTGTTCACTATAGAGTGAAACCGACACAAAAAATAAGCCACTTTGTCCACAGGCATGAACCACCGGTAATGGCCTGGGATGTCTCGATTCTGCAGAAAGAACCTGAAGTGCTGACTGTCTGCAAGCCGGCTTCTGTTCCTGTGCATCCTTGCGGTCAATACCGGAAGAACACGATCCTGGGAATTCTCGAAGCAGAGTATGGTTTAACACCACTATTCCCTATACATAGATTGGATCGTCTGGTCTCTGGACTCCTGATATTGGCGAGGAATGCTTGCAAGGCTGATAAGTTCAGGCAACAGATTGAAGCAGGACTGGTGAAAAAACAGTACATTGCAAAGGTTGTGGGGGTTTTTCCAGAGGGTGAGCAAGTTGTGGACTTGAACATAAATTATGATGCTCGAGGAAGAAGTACTGTGGAGGGTCGACATGGAACTGATGGTACAAAAGTAAAAGGCAAGGCTGCTTGTACAAAATTTAGAAGGATAAGCACTAATGGAGTTCTGAGCATTGTCCAATGTGAACCAGTCAGTGGAAGAACACATCAGATACGTGTTCATCTTCAATATACTGGCCATCCAATTGCCAACGATATGCTCTATCTTGTCGAATCAATTGCTCAACGTTCCACTGAAGGAATGAGTGCTGATAGAGCTGCTGCTAAATTGAGGGATTCTTTGCAATGCAGTACTGCTGAAGAAGACAATGAAGAGGGATCGTTTACAGATTTTAGCGTCGATCCTATGTGTACAAATTGTCCAAATTTGGGTCCTAAAGGGTATGGTGGTCATGAGGAGGGTTTGTGGCTACATTGTGTAAAGTACACAGGGCCTGATTGGACTTATGAATGCCCATATCCTGACTGGGCCAACCTCGACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_96100.p1 GENE.R_Transcript_96100~~R_Transcript_96100.p1 ORF type:5prime_partial len:416 (+),score=65.35,PseudoU_synth_2|PF00849.18|2.7e-26 R_Transcript_96100:3-1250(+)
SLKPIPTIMLKMKRKRNQEEQQLDHLQQPTSATTTTTTTTTTGTMDIVWQTPANPPLREDYILHKGRRYVRPYYFEFICHVKNRWPGKTIVDLFADEFKGRPYDYYVTAVKCGRIQVDGQNVSVHYRVKPTQKISHFVHRHEPPVMAWDVSILQKEPEVLTVCKPASVPVHPCGQYRKNTILGILEAEYGLTPLFPIHRLDRLVSGLLILARNACKADKFRQQIEAGLVKKQYIAKVVGVFPEGEQVVDLNINYDARGRSTVEGRHGTDGTKVKGKAACTKFRRISTNGVLSIVQCEPVSGRTHQIRVHLQYTGHPIANDMLYLVESIAQRSTEGMSADRAAAKLRDSLQCSTAEEDNEEGSFTDFSVDPMCTNCPNLGPKGYGGHEEGLWLHCVKYTGPDWTYECPYPDWANLD*

Click here to download the sequence:
Link to NCBI Protein BLAST