Transcript Information: R_Transcript_97496.p1


Annotated TAIR IDAT5G06140.1
Annotated Gene Namesorting nexin 1
Annotated Gene Symbol(s)SNX1, ATSNX1
Annotation TypeOrtholog
Chromosome Positionchr5:1856212-1858752 | Reverse length=402
E-Value1E-234
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 137.366483344027
Replicate 228.134000557819
Replicate 335.752699622779
Condition 2: 8 Hour
Replicate 126.85546478085
Replicate 231.460595543306
Replicate 339.411065242776
Condition 3: 24 Hour
Replicate 137.655361234522
Replicate 233.329162938863
Replicate 338.018345609995


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_97496.p1 GENE.R_Transcript_97496~~R_Transcript_97496.p1 ORF type:complete len:403 (+),score=91.88,PX|PF00787.20|5.1e-24,PX|PF00787.20|3.2e+03,Vps5|PF09325.6|6.6e-24 R_Transcript_97496:287-1495(+)
ATGCAGCAAAACCAGAGAAGTTCGTCAGGTTCATCATCTCAAAGCCCTAGATCCCCTCATTCTCAACCCTTTCTCTCTGTTTCAGTCACTGATCCCGTCAAATTGGGCAATGGCGTCCAAGCTTACATCTCTTACCGGGTCATCACCAAGACCAATTTACCAGATTATCAAGGGCCAGAAAAGATTGTCATCCGACGATACAGCGATTTTGTTTGGCTACGTGATCGTCTTTTTGAGAGATACAAAGGCATTTTCATACCGCCACTTCCCGAGAAAAGCGCTGTTGAGAAATTTCGCTTCAGTGCTGAGTTTATTGAAATGAGACGTCAAGGATTGGATATATTTGTCAACCGAATTGCTTCACATCATGAGCTTCGCCAAAGTGATGATCTGAGGTTGTTCTTGCAGGCAGATGAAGAGACAATGGAGAGAGTAAGGGCTCAGGAGATTAGTATTTTCAAGAGGAGACCAGCTGATTTAATGCAAATCTTCAAGGATGTACAATCTAAAGTAAGTGATGTCGTTTTGGGCAAGGAAAAACCTGTAGAAGAATCTACTCCTGAGTATGAGAAGATGAAGCATTATATATTTGAGCTTGAGGACCACTTAGCGGAAGCACAAAAGCATGCTTTTCGCCTCGTAAAGAGGCACAGAGAATTGGGACAATCACTGTCAGATTTTGGTAGGGCGATCAAGCTTTTAGGTGCCTGTGAGGGTGATTCTCTTGGGAAGGCATTTTCTGAGCTTGGCTCAAAGTCAGAGGCCTTGTCAGTCAAGCTTCAAGCAGAGGCTCACCATCTATTGATGAACTTTGAAGAACCATTGAAAGATTATGTTCGTGCTGTGCAGTCTATCAATGCCACTATAGCGGAGAGAGCTACTGCCTTCAAGCAACATTGCGAGCTATCTGAGACAGTGAGGCTGAAGGAGATAAATCTAGACAAGCTCATGTTGACACGGTCTGAGAAGTTTGGAGAAGCTGAGGCTGAGTATAGGGAGCTAAAAGCAGAGAGCGAGGAAGCAACAAGAAGGTTTGAAACAATTGTTCGGCTAATGAATGAAGAGATGGCATGTTTTCAAGAACAGAAAACGGCAGATATGGGGCTAGCATTCCATGAGTTTGCCAAAGGACAAGCACGTTTGGCCAATAGCATAGCTGAAGCATGGAGAGGCCTGCTTCCAAAGCTTGAAGCCTGCTCGTCATCATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_97496.p1 GENE.R_Transcript_97496~~R_Transcript_97496.p1 ORF type:complete len:403 (+),score=91.88,PX|PF00787.20|5.1e-24,PX|PF00787.20|3.2e+03,Vps5|PF09325.6|6.6e-24 R_Transcript_97496:287-1495(+)
MQQNQRSSSGSSSQSPRSPHSQPFLSVSVTDPVKLGNGVQAYISYRVITKTNLPDYQGPEKIVIRRYSDFVWLRDRLFERYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDIFVNRIASHHELRQSDDLRLFLQADEETMERVRAQEISIFKRRPADLMQIFKDVQSKVSDVVLGKEKPVEESTPEYEKMKHYIFELEDHLAEAQKHAFRLVKRHRELGQSLSDFGRAIKLLGACEGDSLGKAFSELGSKSEALSVKLQAEAHHLLMNFEEPLKDYVRAVQSINATIAERATAFKQHCELSETVRLKEINLDKLMLTRSEKFGEAEAEYRELKAESEEATRRFETIVRLMNEEMACFQEQKTADMGLAFHEFAKGQARLANSIAEAWRGLLPKLEACSSS*

Click here to download the sequence:
Link to NCBI Protein BLAST