Transcript Information: R_Transcript_98119.p1


Annotated TAIR IDAT1G43980.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:16687637-16689502 | Reverse length=621
E-Value1E-158
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.865885458311
Replicate 22.0407619096215
Replicate 32.6546125812364
Condition 2: 8 Hour
Replicate 11.8307188745604
Replicate 22.3823743270048
Replicate 32.6803312878702
Condition 3: 24 Hour
Replicate 13.046737033957
Replicate 21.937564799733
Replicate 32.6183422429186


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_98119.p1 GENE.R_Transcript_98119~~R_Transcript_98119.p1 ORF type:complete len:535 (+),score=86.96,PPR_2|PF13041.2|2.4e-10,PPR_2|PF13041.2|5.2,PPR_2|PF13041.2|4.4e-08,PPR_2|PF13041.2|19,PPR_2|PF13041.2|2.7e-07,PPR_2|PF13041.2|0.75,PPR_2|PF13041.2|9.5e-08,PPR_2|PF13041.2|1.1e+04,PPR_2|PF13041.2|35,PPR_2|PF13041.2|1.7e+03,PPR|PF01535.16|6.3e+02,PPR|PF01535.16|0.001,PPR|PF01535.16|0.2,PPR|PF01535.16|0.0015,PPR|PF01535.16|89,PPR|PF01535.16|0.94,PPR|PF01535.16|0.0014,PPR|PF01535.16|0.01,PPR|PF01535.16|1.7e-06,PPR|PF01535.16|3.3e+02,PPR|PF01535.16|0.23,PPR|PF01535.16|4.5e+03,PPR|PF01535.16|4.1e+03,PPR_1|PF12854.3|1.4,PPR_1|PF12854.3|9.8e+02,PPR_1|PF12854.3|4.3,PPR_1|PF12854.3|0.009,PPR_1|PF12854.3|1.3e+02,PPR_1|PF12854.3|1.1e+02,PPR_1|PF12854.3|4.8e+02,PPR_1|PF12854.3|71,PPR_1|PF12854.3|1.7,PPR_1|PF12854.3|0.00043,PPR_1|PF12854.3|2.9e+03,PPR_1|PF12854.3|0.47,PPR_3|PF13812.2|99,PPR_3|PF13812.2|1.8e+02,PPR_3|PF13812.2|0.48,PPR_3|PF13812.2|4e+03,PPR_3|PF13812.2|1.8e+03,PPR_3|PF13812.2|2.3e+03,PPR_3|PF13812.2|13,PPR_3|PF13812.2|0.016,PPR_3|PF13812.2|63,PPR_3|PF13812.2|3.4,PPR_3|PF13812.2|3.7e+02 R_Transcript_98119:317-1921(+)
ATGGCACAATGTCTGTTCCAGGAAATGCCTGAACGTGATGTTGTGAGTTGGAATTCTATGATCTCATGGCATGCTTCTGGTGGGCATTGTGATTATGTGTGGGGATTATTCAGGGATATGTTATACGTCGGAGTGAATCCAAGTGGGCACACTTATTCGATTCTTTTCTCTGAGGTGTCTGATTCTCTCCATGGCAAGCAACTTCATGGTAGCTTGCTAAGAAGTGGTTTATTCAGGTCAAATGTGGTGCTGGGAAATTCCTTAATTGATATGTATGGTAATCTTGGCATTATAGACTATGCATTTGGTGTGTTTTTGATGATGGAACAGCTGGATGTAATATCTTGGAATTCATTGATTATGGGATGTTGTAGAACTGGACACAGAGAACTAGCATTATATCAGTTTTCTTTGATGAGGTTCTTGGGATATTTACCAGATGAGTTTACATGCTCTTCGGTGATCACTTGTTGTACTAACTTGTGGAGTTTGGAGAGGGGTAAGCAGATTTTTACTCTCTGTATTAAGGCTGGCTTTCTTTCTAACTCCATTGTCTCAAGTGCCATCATTGATTTATTCTCCAAATGCAATCGATTGGAGCATTCTGTTCAACTCTTTGAAGAAGTTCAGATACGGGATTCTAAAGTTTGCAATTCCATGATTTCAGGCTATTCACAGCATGGTATCGGAGAGATTGCTCTCCACATTTTTGTGCTTATGTTGAGGGAAGATATTAGACCTACTGAGTTCACTCTTAGCAGTGTTCTGACCTCTCTTTGTTCTGTGCCTATGGAGCAGGGAACTCAAATCCATTCTTATGCTGTAATATTAGGTTTTGAGATGGATGATGTTGTTGCTAGCTCACTTCTTCATATGTACACGAAGTTTGGGTTCATTGATGATGCCATGAAAATCTTTTCAAGTATGGCTGTACGAGATTTGATATCCTGGAATACAATGATCTTTGGTTTGACTCACAATGGTAGACTGGTTGAGGCCATCGAGACCTTCAAGGAACTACATAAGAGTGGTCTGCCACCTGATCGAATCTCACTGGATGCTGTGCTGTTAGCTTGTAGATATGGAGGGTTTGTTGATGAAGCAAGGACTATACTTTTGGGAATGAAGGAGCATTATGGGTTTACACCCTGCTGTGAGCATATTACTAGTTTTGTGGACTTGTTTTGCCGAGCCGGTAGGTTAAATGAAGTTCTGGAAATTACTAAGAGGATGGCTTATGAAACTAATACTACAATTCAGAGATCACTGCTTCATGCCTGTGTTGTTTATGGAGATGTGACACTTGCTGAGCTAGTAGCACATAGATTGATGGAGTTGGAACCTCAATTATCTCTACCTTACCTGATTTTGGCTCGTATATATGAGATGAGGGGTCAATGGGAGGACTCAGTTCGAGTAAGGGAAGCAGTGAGGAGGAATATAGTACTGAAGGAAACTACAGTATATACTTGGATTGGAATAAAAAGTAGTGTATATACTTTTATGGAAGAAGAGATGCAGCATCATGTAGACAACAGAACATACTCAGTTCTCAGATTATTGACCTGGGAGAAAGATGAAACCATATGCATGGTAGCAGATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_98119.p1 GENE.R_Transcript_98119~~R_Transcript_98119.p1 ORF type:complete len:535 (+),score=86.96,PPR_2|PF13041.2|2.4e-10,PPR_2|PF13041.2|5.2,PPR_2|PF13041.2|4.4e-08,PPR_2|PF13041.2|19,PPR_2|PF13041.2|2.7e-07,PPR_2|PF13041.2|0.75,PPR_2|PF13041.2|9.5e-08,PPR_2|PF13041.2|1.1e+04,PPR_2|PF13041.2|35,PPR_2|PF13041.2|1.7e+03,PPR|PF01535.16|6.3e+02,PPR|PF01535.16|0.001,PPR|PF01535.16|0.2,PPR|PF01535.16|0.0015,PPR|PF01535.16|89,PPR|PF01535.16|0.94,PPR|PF01535.16|0.0014,PPR|PF01535.16|0.01,PPR|PF01535.16|1.7e-06,PPR|PF01535.16|3.3e+02,PPR|PF01535.16|0.23,PPR|PF01535.16|4.5e+03,PPR|PF01535.16|4.1e+03,PPR_1|PF12854.3|1.4,PPR_1|PF12854.3|9.8e+02,PPR_1|PF12854.3|4.3,PPR_1|PF12854.3|0.009,PPR_1|PF12854.3|1.3e+02,PPR_1|PF12854.3|1.1e+02,PPR_1|PF12854.3|4.8e+02,PPR_1|PF12854.3|71,PPR_1|PF12854.3|1.7,PPR_1|PF12854.3|0.00043,PPR_1|PF12854.3|2.9e+03,PPR_1|PF12854.3|0.47,PPR_3|PF13812.2|99,PPR_3|PF13812.2|1.8e+02,PPR_3|PF13812.2|0.48,PPR_3|PF13812.2|4e+03,PPR_3|PF13812.2|1.8e+03,PPR_3|PF13812.2|2.3e+03,PPR_3|PF13812.2|13,PPR_3|PF13812.2|0.016,PPR_3|PF13812.2|63,PPR_3|PF13812.2|3.4,PPR_3|PF13812.2|3.7e+02 R_Transcript_98119:317-1921(+)
MAQCLFQEMPERDVVSWNSMISWHASGGHCDYVWGLFRDMLYVGVNPSGHTYSILFSEVSDSLHGKQLHGSLLRSGLFRSNVVLGNSLIDMYGNLGIIDYAFGVFLMMEQLDVISWNSLIMGCCRTGHRELALYQFSLMRFLGYLPDEFTCSSVITCCTNLWSLERGKQIFTLCIKAGFLSNSIVSSAIIDLFSKCNRLEHSVQLFEEVQIRDSKVCNSMISGYSQHGIGEIALHIFVLMLREDIRPTEFTLSSVLTSLCSVPMEQGTQIHSYAVILGFEMDDVVASSLLHMYTKFGFIDDAMKIFSSMAVRDLISWNTMIFGLTHNGRLVEAIETFKELHKSGLPPDRISLDAVLLACRYGGFVDEARTILLGMKEHYGFTPCCEHITSFVDLFCRAGRLNEVLEITKRMAYETNTTIQRSLLHACVVYGDVTLAELVAHRLMELEPQLSLPYLILARIYEMRGQWEDSVRVREAVRRNIVLKETTVYTWIGIKSSVYTFMEEEMQHHVDNRTYSVLRLLTWEKDETICMVAD*

Click here to download the sequence:
Link to NCBI Protein BLAST