Transcript Information: R_Transcript_98229.p1


Annotated TAIR IDAT4G17616.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:9819608-9821632 | Forward length=674
E-Value3.9E-173
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.9064365797503
Replicate 22.4271489339175
Replicate 33.6050993709822
Condition 2: 8 Hour
Replicate 12.7964358296297
Replicate 23.0208990788231
Replicate 33.8932423893309
Condition 3: 24 Hour
Replicate 14.4764526627835
Replicate 23.7782685843189
Replicate 35.3042626957105


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_98229.p1 GENE.R_Transcript_98229~~R_Transcript_98229.p1 ORF type:complete len:718 (+),score=135.92,PPR_2|PF13041.2|3.5e+02,PPR_2|PF13041.2|1.7,PPR_2|PF13041.2|0.019,PPR_2|PF13041.2|0.15,PPR_2|PF13041.2|0.00035,PPR_2|PF13041.2|3.8,PPR_3|PF13812.2|3.5e+03,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|8.7,PPR_3|PF13812.2|7.3e+03,PPR_3|PF13812.2|1.9e+03,PPR_3|PF13812.2|0.72,PPR_3|PF13812.2|3.5e+03,PPR_3|PF13812.2|8.8e+03,PPR_3|PF13812.2|0.019,PPR|PF01535.16|1.2e+03,PPR|PF01535.16|19,PPR|PF01535.16|0.13,PPR|PF01535.16|1.7e+02,PPR|PF01535.16|3.7e+03,PPR|PF01535.16|8.9 R_Transcript_98229:1686-3839(+)
ATGGCATTATCTCCTGTAAACGAGATCAAAATGTATCGTCAGCCTATTGAGTTCTTTGGATTGCATTTACATGCCATTTCAAGTATGAAGATGTCTGCCTCAGGAGTGGTCAATGACAGAAAATGCTTGCTAAAATACTGTGTACGCATTTACCAGGAATCCAATTTATGGTGGGACAATTTGAGGGTTCCATATCTCAAACTGTACTCAACTACTATTCAACCTCAAGATGAAGGTTTTGACCAAAATATTCTGTTGACAAAGCTTGAAAGTGCATTGAGGGAATCTAAACATGAAGCAGCATGGCGTAGTTTCAATGAGTTTAAAAGCTTGCATGGCTTTCCTGCTCCATCTCTTGTGAGTAAGCTGATCACTGTACTTTCATATTCATCTGATCAGCGATCACTACACAAAGCATGTAATATAATTTTTGAAACTGCAAAAGAGAGGCCAGAATTGCTTCAACATGATACACTGTCTAGGCTTTCCCTTATGCTGGGAAGAGCTCAGATGCTTGTACCTGCATCAAAAATAATTAGACTGATGCTGCAGAAAAACAGTGCTCCTGCAATGGATGTCCTGTCTTCTGTGTTTATGCATATGGTGAAGACTGAGGTGGGGACTAATCTGGCATCCAATATGCTGCTTGAGATTTGTGATTGTTTCCATTGCCTTAGTGAAAAGAAATCTGAATGCGCCATGTCTATGAAACCTAACACCACAGTCTTCAATCTGATTCTTGATGCTTGTGTGAGATTTCAATCATCATTGAAAGGGCAACAGATAATAGAGGTCATGGCACGGACTGGAGTGGTAGTTGACGCATACTCTGTTGTTCTGTTCGCTAAGATTTATGAGATGAATGGCCAAAGGGATGAGTTAAAGAAGTTTAAAGAGTATGTAGATCGAGTTTCAATTCCTCTTGCTCAGCATTACAGTCAGTTCTATGATAAGTTATTGAGCTTGCATTATAGGTTTGACGATCTTTATGCTGCTGCCACTCTTGTAACGGATATGTATTTCCTCTGGGGTTCTCGTCCCCTGCAGGGAAATAAGGACTTGAAAAATCCTTGTCCAGTACCAATTGGTTCCCCTTATTTGAAAAAAGATTTGAAAGCTCAAGTTATGTTTGAGCTGTTGCAAAAGGATTCTCTCTTCCATGTCAAAGGTAGAGATGACTTTGTACTAGTTAAAAATGGGAAACTTGTCCTTAGCTGTAAAGGATGGGCACAACTCATCATAAGATACAAGAGAAGTGGAAAGATTGCTGAATTGTCAAAAATTTTAGCTGTAATTGAAAAGGAGATGGATACATATGAAGAAGGCAGTTTTTGCAGTGATGTCATTGACGCATGCATCTATACTGGCTGGCTAGAGACTGCTCATGATATTGTGGATGATATGGAGATGGCCAAAGTTCCTGTTCCTACCAAAACGTACATGTTACTCTTGAAGGCGTACTGCAGAAATAATATGTCCAAGGAAGTTCAAGCACTGGCAAAGCAAATTAAACGGGTTGGCTTGCCCTTAGATCCAAGTGATGAGATTATTGTTTCTGAATGTCTTTCAGGTGTAGCACATGGAAGTGGTCCGAGTCTGCTTGCACCAGTTACTGATCGGCAATCAGAATTAATGGACTGTCTGGTTCTAGAAACGAAAAAGGAAGATAAAGATCCGTCGAAGGTTATTCTTGAAATAAATTCTTCAATATATTTCTTTTGCCAGGCCAAAATGATGGAAGATGCACAGCAGGCATACAGGAAAGTGCAGGTGTTAAATGTCCAACCCACAGTGCAGACTTTTGCCTACCTGATACAGGGTTACTCTTCTTTGAATTTGTATCGGCCAATCACCATCCTATGGGGTGACATCAAAAGGTACATGGACCATGGGTGTGAGCTTGTAAACAGGGATTTGTATGAGTCATTGCTCCTGAATTTTCTTCGGGGAGGGTACTTTGAGAGGGTAATGGAGGTTATTAGCCGTATGAAGGAGCAGAGCATTTATATGGATAGATGGTTGTACAAGAATGAGTTTGTCAGAATCCATAAGAATCTTTACAGGAGAATGAAGGCAGGAGATGCTAGAAATGAAGCACAGAGATTGAGGCTTGAGCATGTTAGTGCCTTCAGGAGGTGGGTTCGCAATAGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_98229.p1 GENE.R_Transcript_98229~~R_Transcript_98229.p1 ORF type:complete len:718 (+),score=135.92,PPR_2|PF13041.2|3.5e+02,PPR_2|PF13041.2|1.7,PPR_2|PF13041.2|0.019,PPR_2|PF13041.2|0.15,PPR_2|PF13041.2|0.00035,PPR_2|PF13041.2|3.8,PPR_3|PF13812.2|3.5e+03,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|8.7,PPR_3|PF13812.2|7.3e+03,PPR_3|PF13812.2|1.9e+03,PPR_3|PF13812.2|0.72,PPR_3|PF13812.2|3.5e+03,PPR_3|PF13812.2|8.8e+03,PPR_3|PF13812.2|0.019,PPR|PF01535.16|1.2e+03,PPR|PF01535.16|19,PPR|PF01535.16|0.13,PPR|PF01535.16|1.7e+02,PPR|PF01535.16|3.7e+03,PPR|PF01535.16|8.9 R_Transcript_98229:1686-3839(+)
MALSPVNEIKMYRQPIEFFGLHLHAISSMKMSASGVVNDRKCLLKYCVRIYQESNLWWDNLRVPYLKLYSTTIQPQDEGFDQNILLTKLESALRESKHEAAWRSFNEFKSLHGFPAPSLVSKLITVLSYSSDQRSLHKACNIIFETAKERPELLQHDTLSRLSLMLGRAQMLVPASKIIRLMLQKNSAPAMDVLSSVFMHMVKTEVGTNLASNMLLEICDCFHCLSEKKSECAMSMKPNTTVFNLILDACVRFQSSLKGQQIIEVMARTGVVVDAYSVVLFAKIYEMNGQRDELKKFKEYVDRVSIPLAQHYSQFYDKLLSLHYRFDDLYAAATLVTDMYFLWGSRPLQGNKDLKNPCPVPIGSPYLKKDLKAQVMFELLQKDSLFHVKGRDDFVLVKNGKLVLSCKGWAQLIIRYKRSGKIAELSKILAVIEKEMDTYEEGSFCSDVIDACIYTGWLETAHDIVDDMEMAKVPVPTKTYMLLLKAYCRNNMSKEVQALAKQIKRVGLPLDPSDEIIVSECLSGVAHGSGPSLLAPVTDRQSELMDCLVLETKKEDKDPSKVILEINSSIYFFCQAKMMEDAQQAYRKVQVLNVQPTVQTFAYLIQGYSSLNLYRPITILWGDIKRYMDHGCELVNRDLYESLLLNFLRGGYFERVMEVISRMKEQSIYMDRWLYKNEFVRIHKNLYRRMKAGDARNEAQRLRLEHVSAFRRWVRNR*

Click here to download the sequence:
Link to NCBI Protein BLAST