Transcript Information: R_Transcript_98285.p1


Annotated TAIR IDAT5G60710.1
Annotated Gene NameZinc finger (C3HC4-type RING finger) family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:24410953-24414849 | Reverse length=704
E-Value6E-37
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.9435102585697
Replicate 24.33446353291
Replicate 35.3362286445582
Condition 2: 8 Hour
Replicate 14.0346027469893
Replicate 24.658517050247
Replicate 34.8473051088533
Condition 3: 24 Hour
Replicate 15.695971111419
Replicate 23.4252485398245
Replicate 35.3061102271266


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_98285.p1 GENE.R_Transcript_98285~~R_Transcript_98285.p1 ORF type:complete len:528 (+),score=73.13,zf-RING_2|PF13639.2|3.4e-09,zf-RING_2|PF13639.2|6.1e+03,zf-rbx1|PF12678.3|6.4e-08,zf-RING_5|PF14634.2|3.6e+03,zf-RING_5|PF14634.2|1.5e-06,zf-RING_11|PF17123.1|6.2e+03,zf-RING_11|PF17123.1|1.5e-06,zf-RING_11|PF17123.1|4.2e+03,zf-RING_11|PF17123.1|4.5e+03,zf-C3HC4|PF00097.21|1.2e+04,zf-C3HC4|PF00097.21|7.3e-06 R_Transcript_98285:108-1691(+)
ATGGGTGGAAATGGAGGAGCTTCATCAAAGCTCAAAAGGGTAGCCAAGAAATTCATCTTACTTCCATGTACCTCTTTGTGCTCTACCCGTTTTGTAGACTCCACAACCACTGCCAACGGCTGTGCCTCTCCTTCTAATTTGAGTGAAGAACCAGAAATGCCTTCACCTCTAAGGCAAGGATTGAATTTTATGTCAGAGATTGTAGTGGAAGGAGATTATGCAGCTAATATCTCCTCTAAGAATTTGTGCGCTATATGCCTTGAACCGTTACTAAACGGCGCATCATCAAGTCCTGGCAAAGCAATATTCACATCCCAGTGCTCTCACTCATTCCACCTGTCATGCATCTCATCGAATATCCGCCATGGTAGCATAACGTGCCCTATCTGTCGTGCACAATGGACCCGCCTACCCCACACCTTGCATCCACCTTGTTGGCTCTCCCGCAATCAAGATGATCCGATCATCCGCATCCTTGATGATTCCATCAGCTCGTTCCGTGTCCACAGGCGGTCTTTTCTTCGCACTGCTCGTTACAATGACGATGATCCTGTGGAGCCCGAAGTCCATTCCCCTTGCCACCCTCGTCTTTGCCTCAATTTGATACTGTTGGATGTTCCACAAACACTATCACCTTCGAAATTCTGCTCGTGCGTGCAACATCCTTCTCCGAATTCATATCTTTTTCCACGAATCAACATGCATGAGCACATGAATGGTTCGCTCTCACCCTGGTATAAACGCAAACGAGGAGCATATTTATCCGTAAGACTGGCTCCACAGCAAGCCATTGACTTGGTATTGGTTGCCAGCCCAAATGGTCCACACTTGAGGCTTCTTAAGCAATCCATGGCATTAGTAGTATTCTCCTTACGGCCAGCTGATCGGTTGGCTATTGTGAGTTACTCATCATCAGCAGCTCGGATCTTCCCACTTCGCCGGATGACATCCTATGGTAAACGCGCTGCTCTTCAGGTCATTGATCGGCTTTTCTATGCTGGGCATGCTGATCCCGTTGAAGGTATTAAAAAAGGGGTTAAGATTCTCAAGGACCGTACTCATGAGAACCCGCATTCCTCCATTCTCCACTTGTCTGATTATCCTACCACTAGTCGATCTTACAGGACCATCAATGACATGGACATTGGTATTCCTGTCTCTGTTCATCAGTTTCATGTGGCGTCAACTGGCTCCATAATGCATGAACTTGAGGAGTTCTTGGGGCAGCTGTTGGGTGGTGTTGTCCGGGAAGTGCAGTTGAGAATCGGCGATCAGGAGGATGGCAGAATTGTGAGGCTCGGGGAGCTTAGGGGTGACGAAGAGAGAAGAGTAATCTTAGAGGTCGATGAGTCTCATGATCATATTTGTGTGGGCTACAGCTATGTGGAGGGTGGTATTGGGGTTGATGAACATATCAGAGTAGGGGAAGTTGTGGTGGGCATTAGCGGTGGGGGGGAGATCGAGGATAGTGCAGAAGCTGCCATTACTGGTGGAAGGGCAAGCTGTGTTGACAGTTGGGATTACCATGACCCTTACATGGCTAGGAGATGGGCTAAGAGACTGCATGGAAGACACAGGATATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_98285.p1 GENE.R_Transcript_98285~~R_Transcript_98285.p1 ORF type:complete len:528 (+),score=73.13,zf-RING_2|PF13639.2|3.4e-09,zf-RING_2|PF13639.2|6.1e+03,zf-rbx1|PF12678.3|6.4e-08,zf-RING_5|PF14634.2|3.6e+03,zf-RING_5|PF14634.2|1.5e-06,zf-RING_11|PF17123.1|6.2e+03,zf-RING_11|PF17123.1|1.5e-06,zf-RING_11|PF17123.1|4.2e+03,zf-RING_11|PF17123.1|4.5e+03,zf-C3HC4|PF00097.21|1.2e+04,zf-C3HC4|PF00097.21|7.3e-06 R_Transcript_98285:108-1691(+)
MGGNGGASSKLKRVAKKFILLPCTSLCSTRFVDSTTTANGCASPSNLSEEPEMPSPLRQGLNFMSEIVVEGDYAANISSKNLCAICLEPLLNGASSSPGKAIFTSQCSHSFHLSCISSNIRHGSITCPICRAQWTRLPHTLHPPCWLSRNQDDPIIRILDDSISSFRVHRRSFLRTARYNDDDPVEPEVHSPCHPRLCLNLILLDVPQTLSPSKFCSCVQHPSPNSYLFPRINMHEHMNGSLSPWYKRKRGAYLSVRLAPQQAIDLVLVASPNGPHLRLLKQSMALVVFSLRPADRLAIVSYSSSAARIFPLRRMTSYGKRAALQVIDRLFYAGHADPVEGIKKGVKILKDRTHENPHSSILHLSDYPTTSRSYRTINDMDIGIPVSVHQFHVASTGSIMHELEEFLGQLLGGVVREVQLRIGDQEDGRIVRLGELRGDEERRVILEVDESHDHICVGYSYVEGGIGVDEHIRVGEVVVGISGGGEIEDSAEAAITGGRASCVDSWDYHDPYMARRWAKRLHGRHRI*

Click here to download the sequence:
Link to NCBI Protein BLAST