Transcript Information: R_Transcript_9945.p2


Annotated TAIR IDAT5G10690.1
Annotated Gene Namepentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:3374443-3377332 | Reverse length=580
E-Value3E-65
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.59736963124534
Replicate 20.38175091665997
Replicate 30.49978336573423
Condition 2: 8 Hour
Replicate 10.26711852669722
Replicate 21.3823090592733
Replicate 30.72606442481548
Condition 3: 24 Hour
Replicate 10.58438054761429
Replicate 20.88221035562309
Replicate 30.2387749602207


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_9945.p2 GENE.R_Transcript_9945~~R_Transcript_9945.p2 ORF type:complete len:275 (+),score=50.43,PPR_2|PF13041.2|6e+03,PPR_2|PF13041.2|9.8e-09,PPR_2|PF13041.2|0.048,PPR_2|PF13041.2|1.6e+03,PPR_2|PF13041.2|8.2e-10,PPR_2|PF13041.2|0.0031,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.013,PPR_3|PF13812.2|0.85,PPR_3|PF13812.2|7.2e+02,PPR_3|PF13812.2|4.4e-06,PPR_3|PF13812.2|0.00084,PPR|PF01535.16|0.0013,PPR|PF01535.16|0.044,PPR|PF01535.16|7.2e+02,PPR|PF01535.16|0.00027,PPR|PF01535.16|0.012,PPR_1|PF12854.3|5.1,PPR_1|PF12854.3|8.8e-06,PPR_1|PF12854.3|2.9e+03,PPR_1|PF12854.3|18,PPR_1|PF12854.3|0.01 R_Transcript_9945:145-969(+)
ATGCATTATCAACTTTTCAATTCTTCACCCTACAAACTAATTCCAATCTCAACCATCTTTCCCATTTCTACCCTTCTATCTTCCCACCAATACTATCACAACCATGGCTACCCTTCAATCCTTAGTTATCATGTTTCTTCACTCAGAAAGTCCCGCCGTCCTTCCAAATCCACTTTCAAACGCCTCACTTCTCGTGTTGTTCTGCTCACTCGCCGCAAACAACTCCACCAGGTTTTTGAAGAGATTGAGCTAGCGAAACGGAAATATGGAGGGCTGAATACTATTGTGATGAACGCGGTGCTGGAGGCGTGTGTTCAGTGTGGTGACATTGATTCTGCCCTTAGCTTGTTTGATGAGATTTCTAACTCTAGGAGTTGTTGTGTTGATAATGTATCTTATGCCATTCTTTTGAAGGGTTTGGGTATGGCTCGAAGAGTTGATGAAGCATTTCAACTTCTTGAATCTGTGGATCGGGGCAATGCTGCTGGAAATCCAAAGTTATCCGCGCCACTTCTCCATGGCCTGCTTAATGCACTTATTGATGCAGGAGATCTACGCCGTGCTAATGGTCTTCTTGCACGCTATGGATTTGTGTTCCTTGAAGGTGGCAATCCTTCCATCTTGATCTACAACTTGTTAATGAAGGGTTACATTACAACAGGGTCACCTGAGGCTGCATTCACTGTTCATAATGAAATGCTACGACAAGGATTAAGGCCTGACAGACTTGCCTATAACACCCTAATCCTTGCTGCGGTGAAGACAAAGAAAAAGGATGCTGCGATGCAGTTCTTGGAGGAAATGAAGGTCTCAAGCAAGTATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_9945.p2 GENE.R_Transcript_9945~~R_Transcript_9945.p2 ORF type:complete len:275 (+),score=50.43,PPR_2|PF13041.2|6e+03,PPR_2|PF13041.2|9.8e-09,PPR_2|PF13041.2|0.048,PPR_2|PF13041.2|1.6e+03,PPR_2|PF13041.2|8.2e-10,PPR_2|PF13041.2|0.0031,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.013,PPR_3|PF13812.2|0.85,PPR_3|PF13812.2|7.2e+02,PPR_3|PF13812.2|4.4e-06,PPR_3|PF13812.2|0.00084,PPR|PF01535.16|0.0013,PPR|PF01535.16|0.044,PPR|PF01535.16|7.2e+02,PPR|PF01535.16|0.00027,PPR|PF01535.16|0.012,PPR_1|PF12854.3|5.1,PPR_1|PF12854.3|8.8e-06,PPR_1|PF12854.3|2.9e+03,PPR_1|PF12854.3|18,PPR_1|PF12854.3|0.01 R_Transcript_9945:145-969(+)
MHYQLFNSSPYKLIPISTIFPISTLLSSHQYYHNHGYPSILSYHVSSLRKSRRPSKSTFKRLTSRVVLLTRRKQLHQVFEEIELAKRKYGGLNTIVMNAVLEACVQCGDIDSALSLFDEISNSRSCCVDNVSYAILLKGLGMARRVDEAFQLLESVDRGNAAGNPKLSAPLLHGLLNALIDAGDLRRANGLLARYGFVFLEGGNPSILIYNLLMKGYITTGSPEAAFTVHNEMLRQGLRPDRLAYNTLILAAVKTKKKDAAMQFLEEMKVSSKY*

Click here to download the sequence:
Link to NCBI Protein BLAST