Transcript Information: R_Transcript_99872.p1


Annotated TAIR IDAT3G06920.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:2181717-2184449 | Forward length=871
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.9131399738
Replicate 21.1482351790163
Replicate 31.9429822068165
Condition 2: 8 Hour
Replicate 12.8147813499623
Replicate 23.3441497396416
Replicate 33.9706648232096
Condition 3: 24 Hour
Replicate 13.4846671684908
Replicate 22.3876786968594
Replicate 33.8352339685746


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_99872.p1 GENE.R_Transcript_99872~~R_Transcript_99872.p1 ORF type:complete len:896 (+),score=167.19,PPR_2|PF13041.2|1.8,PPR_2|PF13041.2|0.025,PPR_2|PF13041.2|0.00091,PPR_2|PF13041.2|0.0035,PPR_2|PF13041.2|1.9e-16,PPR_2|PF13041.2|6.8e-10,PPR_2|PF13041.2|1e-05,PPR_2|PF13041.2|9.3e-15,PPR_2|PF13041.2|9.5e-11,PPR_2|PF13041.2|3.4e-10,PPR_2|PF13041.2|4.3e-13,PPR_2|PF13041.2|1.7e-07,PPR_2|PF13041.2|4.2e-09,PPR_2|PF13041.2|2.3e-08,PPR_2|PF13041.2|3.1e-15,PPR_2|PF13041.2|5.5e-11,PPR_2|PF13041.2|1.2e-12,PPR_2|PF13041.2|2.8e-17,PPR_2|PF13041.2|1.7e-14,PPR_2|PF13041.2|1.7e-06,PPR_2|PF13041.2|0.0006,PPR_1|PF12854.3|1.5e+02,PPR_1|PF12854.3|2e+03,PPR_1|PF12854.3|0.00014,PPR_1|PF12854.3|0.00031,PPR_1|PF12854.3|3.3e-12,PPR_1|PF12854.3|0.0017,PPR_1|PF12854.3|2.6e-06,PPR_1|PF12854.3|4e-08,PPR_1|PF12854.3|0.0045,PPR_1|PF12854.3|2.1e-11,PPR_1|PF12854.3|0.0022,PPR_1|PF12854.3|0.27,PPR_1|PF12854.3|0.0015,PPR_1|PF12854.3|2e-08,PPR_1|PF12854.3|9.4e-08,PPR_1|PF12854.3|7e-08,PPR_1|PF12854.3|4.5e-05,PPR_1|PF12854.3|2.8e-11,PPR_1|PF12854.3|4.6e-09,PPR_1|PF12854.3|41,PPR|PF01535.16|1.7,PPR|PF01535.16|4.8,PPR|PF01535.16|0.12,PPR|PF01535.16|0.00028,PPR|PF01535.16|4.9e-07,PPR|PF01535.16|1.3e-07,PPR|PF01535.16|3.2e-05,PPR|PF01535.16|9.1e-07,PPR|PF01535.16|2.3e-05,PPR|PF01535.16|0.052,PPR|PF01535.16|2.5e-07,PPR|PF01535.16|0.00034,PPR|PF01535.16|0.061,PPR|PF01535.16|0.00026,PPR|PF01535.16|1e-07,PPR|PF01535.16|0.00018,PPR|PF01535.16|1.5e-06,PPR|PF01535.16|2.7e-05,PPR|PF01535.16|3.9e-07,PPR|PF01535.16|5.7e-07,PPR|PF01535.16|1.7,PPR|PF01535.16|6.9e+03,PPR_3|PF13812.2|2.1,PPR_3|PF13812.2|25,PPR_3|PF13812.2|0.52,PPR_3|PF13812.2|0.00035,PPR_3|PF13812.2|1.6e-05,PPR_3|PF13812.2|0.00062,PPR_3|PF13812.2|3.2,PPR_3|PF13812.2|1.6e-05,PPR_3|PF13812.2|0.00075,PPR_3|PF13812.2|6.2,PPR_3|PF13812.2|0.0048,PPR_3|PF13812.2|0.00016,PPR_3|PF13812.2|0.036,PPR_3|PF13812.2|1.7,PPR_3|PF13812.2|5.1e-06,PPR_3|PF13812.2|4,PPR_3|PF13812.2|0.0005,PPR_3|PF13812.2|0.87,PPR_3|PF13812.2|3.3e-05,PPR_3|PF13812.2|0.079,PPR_3|PF13812.2|2.1e+03,TPR_16|PF13432.2|48,TPR_16|PF13432.2|8.4e+03,TPR_16|PF13432.2|2.7e+03,TPR_16|PF13432.2|0.26,TPR_16|PF13432.2|1.6e+04,TPR_16|PF13432.2|19,TPR_16|PF13432.2|4.1,TPR_16|PF13432.2|1.6e+04,TPR_16|PF13432.2|1.7e+03,ANAPC3|PF12895.3|2.1e+03,ANAPC3|PF12895.3|1.9e+03,ANAPC3|PF12895.3|2.2e+03,ANAPC3|PF12895.3|0.076,ANAPC3|PF12895.3|1.6e+04,ANAPC3|PF12895.3|1.6,ANAPC3|PF12895.3|3.3e+02,ANAPC3|PF12895.3|1.5e+04,TPR_14|PF13428.2|1.1e+04,TPR_14|PF13428.2|3.7e+03,TPR_14|PF13428.2|2.2e+03,TPR_14|PF13428.2|3.8e+03,TPR_14|PF13428.2|1.5e+02,TPR_14|PF13428.2|2.6e+02,TPR_14|PF13428.2|60,TPR_14|PF13428.2|1.3e+02,TPR_14|PF13428.2|5.2e+03,TPR_14|PF13428.2|8.6e+03,TPR_14|PF13428.2|2.9e+03,TPR_19|PF14559.2|2.9e+03,TPR_19|PF14559.2|1.7e+02,TPR_19|PF14559.2|3.5,TPR_19|PF14559.2|13,TPR_19|PF14559.2|6.7e+02,TPR_19|PF14559.2|2.7,TPR_19|PF14559.2|9.4e+03,TPR_19|PF14559.2|9.4e+03,MRP-S27|PF10037.5|15,MRP-S27|PF10037.5|2.6,MRP-S27|PF10037.5|1.1e+03,MRP-S27|PF10037.5|0.63,MRP-S27|PF10037.5|97,TPR_12|PF13424.2|1.3e+03,TPR_12|PF13424.2|77,TPR_12|PF13424.2|5.2,TPR_12|PF13424.2|6.3,TPR_12|PF13424.2|1.6e+03,TPR_12|PF13424.2|6.1e+02,TPR_12|PF13424.2|2.5e+03,TPR_12|PF13424.2|1.8e+02,TPR_12|PF13424.2|5.1e+03 R_Transcript_99872:378-3065(+)
ATGTTATGCCGCTTTCAAGGCATTATTCGTCATTTAGAGTATAAACATGGTTCATTGTATTTCATGTGGAAGAGATTTACATCCTTGCACAGTGGTCTTCCTGAGCAGAATAGCGAAGGTGTTAGTCCTCCAAGTCGGGGTGGAAGTTCAGTAAATGTTCAGGTTCCCGTACAAGGCGTAGAAGATGTATGCGGTATCTTGGAGAGTGGTCCTTGGGGCCCTGGCATGGAGACATCTTTATCTGCATTTAACGAAAACCATCATCAAGAGCTAATCATTGGAGTCTTGAGGAGACTGAAGGATGTCAATGTAGCCATAAACTATTTTCGATGGTCAGAGAGGAGCAGGAATCTAGTGCATTGCCCAGAGGCATATAATAGTCTGCTCATGATAATGGCTAGAAGTAAAGATTTCAGTAGACTGGAAGAGACTTTGGAGGAAATGAGTCACGCTGGTTTTGGTCCTTCTAATAATACTTGTATTGAGTTTGTTCTATGTTGTGTGAAATCTCGTAGGTTGGATGAGGCTTTCAATTTTATCCAAACAATGAGGAAGTTCAAGTTCCGACCTGCCTTTTCAGCTTACACAACACTTATTGGTTCTCTTTCTGAGATTAGCAAGCCTGACCTCATGCTGACTCTCCTTCAACAGATGCAAGAACTAGGTTATGAAATTAATGTGCACTTGTTCACCACTGTTATACGAGTTTTTGCACGGCATGGGAGGGTTGATACTGTTCTTGCCTTGTTAGATGAGATGAGGAGCAATGCATTTGTTGTAGACATTGTTCTTTATAATGTATGCATTGACTGCTTTGGGAAGCTGGGTAAGGTGGATATGGCCTGGAAATTCTTTCATGAGATGAAAACACAGGGTCTTATGCCAGATGAGGTGACATATACAAGCATGATTGGGGTTTTATGCAAAGCTAATAGGCTTGATGAAGCAGAACAGCTCTTTTATCAGATGGAAGATGGTCGGGAGGTTCCATGTGCCTATGCATATAGCACCATGATAATGGGTTACGGCTCAGCTGGAAAATTTGAAGAAGCGTACAGATTACTTGAAAGGCAAAAGGAAAAAGGCTCCATTCCAAATGTGATTGCGTACAATTGCTTGCTTACTTGTCTTAGCAAGAACGGGAAAGTGGAAGAAGCCCTAGCATTATTTGCTGATATGAAGAAAGATGCTGCACCCAGCCTTTCAACGTATAACATTCTTGTAGACATGCTTTGTCGTGTTGGAAATGTGGATGCTGCTTTTGAGTTGCAAAAGGCCATGGAAGAAGCTGGATTTTTCCCTCATGTCTCTACAGTAAATATCATGATCAATCGCCTGGCTAAGTGTCAGAAGCTTGATGAAGCTTGTGCTATATTTGAAGGGTTGGACCACAAAAATTGCACCCCAGATACTGTCACATTTTGTAGCCTAATAGATGGCTTAGGTAGGCATGGTAGAGTGGATGATGCTTATAGGCTGTATGAAAAAATGTTGGATTCTGGTCATGTTCCAGATGCCGTTGTCTACACATCCCTTATAAAGCATTTCTTCAATGCGGGCAGGCCAGCCGATGGTCACAAGGTCTACAAAGAAATGCTCCGTTCTGGTTGTTCTCCTGACCTGACACTCCTTAATACTTACATGGATTGCGTTTTCAAATCTGGTGATGTTGATAAAGGCCGAGCATTGTTTGAGGAAATTAAGACCAAAGGGTTTGTTCCAGACGTGAGGAGCTATTCGATTCTGATACATGGGCTTGTTAAAGCAGGCTTTTCACGTGAAACTTATCAGTTATATTATTTGATGAAGGAGCAAGGCTGCATTCTGGATATGCGTGCATACAACATTGTCATACATGGATTTTCCAAGTCAGGTAAGGTCAACAAAGCTTACCAATTACTTGAAGAAATGAAGACAAAGGGTCTTCCACCCACTGTAGTCACTTATGGTGCTGTAATTGATGGGCTTGCTAAGATTGACAGGCTTGACGAGGCATATATGCTCTTTGAAGAAGCAAAATCAACCGGAATGGAATTAAATGTTACCATTTATAGTAGCCTTATTGATGGCTTTGGCAAGGTTGGAAGAATTGATGAAGCATATTTAATCATGGAAGAAATGATGCAGAGAGGTTTGAAAGCTAATGTCTACACATGGAATTGTTTGCTTAATGGACTGAGCAAGGCAGAAGAAATCAATGAGGCCATTGTCTGCTTCCAATCAATGAAAGACATGAACTGCACTCCAAATGCCTTTACGTATAGTATTCTAATTGATGGTCTTTGCCGTGTTCGGAAATTCAATAAGGCCTTTGTGCTTCTTCAAGAAATGAAGAAGCAAGGGCTCGAACCAAATGCAGTAACTTACACTACGATGATATCTGGGCTTGCAAGAGCTGGCAATGTAACGGAATCCTATGCACTTTTTAAGAAGTTTAAAGAAAAAGGGGGTAGGCTTGATTCAGCCTGTTATAATGCAACTATTGAAGGATTAAGCATTGCAAACAGGGCTCCAGATGCATATATGCTTTTTGAAGAAGCTCGACATAAAGGTTTCAGTGTCCATTCTAAAACTTGTGTTGTTCTTTTAGATGCATTGCATCGGTGTGAATGCCTTGAGAAGGCGGCTATTGTGGGTGCCATTCTGAAGGAAACGGCAAAAGCACAGCATGCTTCAAGGTCCTTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_99872.p1 GENE.R_Transcript_99872~~R_Transcript_99872.p1 ORF type:complete len:896 (+),score=167.19,PPR_2|PF13041.2|1.8,PPR_2|PF13041.2|0.025,PPR_2|PF13041.2|0.00091,PPR_2|PF13041.2|0.0035,PPR_2|PF13041.2|1.9e-16,PPR_2|PF13041.2|6.8e-10,PPR_2|PF13041.2|1e-05,PPR_2|PF13041.2|9.3e-15,PPR_2|PF13041.2|9.5e-11,PPR_2|PF13041.2|3.4e-10,PPR_2|PF13041.2|4.3e-13,PPR_2|PF13041.2|1.7e-07,PPR_2|PF13041.2|4.2e-09,PPR_2|PF13041.2|2.3e-08,PPR_2|PF13041.2|3.1e-15,PPR_2|PF13041.2|5.5e-11,PPR_2|PF13041.2|1.2e-12,PPR_2|PF13041.2|2.8e-17,PPR_2|PF13041.2|1.7e-14,PPR_2|PF13041.2|1.7e-06,PPR_2|PF13041.2|0.0006,PPR_1|PF12854.3|1.5e+02,PPR_1|PF12854.3|2e+03,PPR_1|PF12854.3|0.00014,PPR_1|PF12854.3|0.00031,PPR_1|PF12854.3|3.3e-12,PPR_1|PF12854.3|0.0017,PPR_1|PF12854.3|2.6e-06,PPR_1|PF12854.3|4e-08,PPR_1|PF12854.3|0.0045,PPR_1|PF12854.3|2.1e-11,PPR_1|PF12854.3|0.0022,PPR_1|PF12854.3|0.27,PPR_1|PF12854.3|0.0015,PPR_1|PF12854.3|2e-08,PPR_1|PF12854.3|9.4e-08,PPR_1|PF12854.3|7e-08,PPR_1|PF12854.3|4.5e-05,PPR_1|PF12854.3|2.8e-11,PPR_1|PF12854.3|4.6e-09,PPR_1|PF12854.3|41,PPR|PF01535.16|1.7,PPR|PF01535.16|4.8,PPR|PF01535.16|0.12,PPR|PF01535.16|0.00028,PPR|PF01535.16|4.9e-07,PPR|PF01535.16|1.3e-07,PPR|PF01535.16|3.2e-05,PPR|PF01535.16|9.1e-07,PPR|PF01535.16|2.3e-05,PPR|PF01535.16|0.052,PPR|PF01535.16|2.5e-07,PPR|PF01535.16|0.00034,PPR|PF01535.16|0.061,PPR|PF01535.16|0.00026,PPR|PF01535.16|1e-07,PPR|PF01535.16|0.00018,PPR|PF01535.16|1.5e-06,PPR|PF01535.16|2.7e-05,PPR|PF01535.16|3.9e-07,PPR|PF01535.16|5.7e-07,PPR|PF01535.16|1.7,PPR|PF01535.16|6.9e+03,PPR_3|PF13812.2|2.1,PPR_3|PF13812.2|25,PPR_3|PF13812.2|0.52,PPR_3|PF13812.2|0.00035,PPR_3|PF13812.2|1.6e-05,PPR_3|PF13812.2|0.00062,PPR_3|PF13812.2|3.2,PPR_3|PF13812.2|1.6e-05,PPR_3|PF13812.2|0.00075,PPR_3|PF13812.2|6.2,PPR_3|PF13812.2|0.0048,PPR_3|PF13812.2|0.00016,PPR_3|PF13812.2|0.036,PPR_3|PF13812.2|1.7,PPR_3|PF13812.2|5.1e-06,PPR_3|PF13812.2|4,PPR_3|PF13812.2|0.0005,PPR_3|PF13812.2|0.87,PPR_3|PF13812.2|3.3e-05,PPR_3|PF13812.2|0.079,PPR_3|PF13812.2|2.1e+03,TPR_16|PF13432.2|48,TPR_16|PF13432.2|8.4e+03,TPR_16|PF13432.2|2.7e+03,TPR_16|PF13432.2|0.26,TPR_16|PF13432.2|1.6e+04,TPR_16|PF13432.2|19,TPR_16|PF13432.2|4.1,TPR_16|PF13432.2|1.6e+04,TPR_16|PF13432.2|1.7e+03,ANAPC3|PF12895.3|2.1e+03,ANAPC3|PF12895.3|1.9e+03,ANAPC3|PF12895.3|2.2e+03,ANAPC3|PF12895.3|0.076,ANAPC3|PF12895.3|1.6e+04,ANAPC3|PF12895.3|1.6,ANAPC3|PF12895.3|3.3e+02,ANAPC3|PF12895.3|1.5e+04,TPR_14|PF13428.2|1.1e+04,TPR_14|PF13428.2|3.7e+03,TPR_14|PF13428.2|2.2e+03,TPR_14|PF13428.2|3.8e+03,TPR_14|PF13428.2|1.5e+02,TPR_14|PF13428.2|2.6e+02,TPR_14|PF13428.2|60,TPR_14|PF13428.2|1.3e+02,TPR_14|PF13428.2|5.2e+03,TPR_14|PF13428.2|8.6e+03,TPR_14|PF13428.2|2.9e+03,TPR_19|PF14559.2|2.9e+03,TPR_19|PF14559.2|1.7e+02,TPR_19|PF14559.2|3.5,TPR_19|PF14559.2|13,TPR_19|PF14559.2|6.7e+02,TPR_19|PF14559.2|2.7,TPR_19|PF14559.2|9.4e+03,TPR_19|PF14559.2|9.4e+03,MRP-S27|PF10037.5|15,MRP-S27|PF10037.5|2.6,MRP-S27|PF10037.5|1.1e+03,MRP-S27|PF10037.5|0.63,MRP-S27|PF10037.5|97,TPR_12|PF13424.2|1.3e+03,TPR_12|PF13424.2|77,TPR_12|PF13424.2|5.2,TPR_12|PF13424.2|6.3,TPR_12|PF13424.2|1.6e+03,TPR_12|PF13424.2|6.1e+02,TPR_12|PF13424.2|2.5e+03,TPR_12|PF13424.2|1.8e+02,TPR_12|PF13424.2|5.1e+03 R_Transcript_99872:378-3065(+)
MLCRFQGIIRHLEYKHGSLYFMWKRFTSLHSGLPEQNSEGVSPPSRGGSSVNVQVPVQGVEDVCGILESGPWGPGMETSLSAFNENHHQELIIGVLRRLKDVNVAINYFRWSERSRNLVHCPEAYNSLLMIMARSKDFSRLEETLEEMSHAGFGPSNNTCIEFVLCCVKSRRLDEAFNFIQTMRKFKFRPAFSAYTTLIGSLSEISKPDLMLTLLQQMQELGYEINVHLFTTVIRVFARHGRVDTVLALLDEMRSNAFVVDIVLYNVCIDCFGKLGKVDMAWKFFHEMKTQGLMPDEVTYTSMIGVLCKANRLDEAEQLFYQMEDGREVPCAYAYSTMIMGYGSAGKFEEAYRLLERQKEKGSIPNVIAYNCLLTCLSKNGKVEEALALFADMKKDAAPSLSTYNILVDMLCRVGNVDAAFELQKAMEEAGFFPHVSTVNIMINRLAKCQKLDEACAIFEGLDHKNCTPDTVTFCSLIDGLGRHGRVDDAYRLYEKMLDSGHVPDAVVYTSLIKHFFNAGRPADGHKVYKEMLRSGCSPDLTLLNTYMDCVFKSGDVDKGRALFEEIKTKGFVPDVRSYSILIHGLVKAGFSRETYQLYYLMKEQGCILDMRAYNIVIHGFSKSGKVNKAYQLLEEMKTKGLPPTVVTYGAVIDGLAKIDRLDEAYMLFEEAKSTGMELNVTIYSSLIDGFGKVGRIDEAYLIMEEMMQRGLKANVYTWNCLLNGLSKAEEINEAIVCFQSMKDMNCTPNAFTYSILIDGLCRVRKFNKAFVLLQEMKKQGLEPNAVTYTTMISGLARAGNVTESYALFKKFKEKGGRLDSACYNATIEGLSIANRAPDAYMLFEEARHKGFSVHSKTCVVLLDALHRCECLEKAAIVGAILKETAKAQHASRSF*

Click here to download the sequence:
Link to NCBI Protein BLAST