Transcript Information: S_Transcript_100059.p1


Annotated TAIR IDAT3G27750.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:10284820-10285488 | Forward length=222
E-Value2.5E-64
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.4839058947189
Replicate 29.2262574513244
Replicate 38.1818683716337
Condition 2: 8 Hour
Replicate 19.7709061089409
Replicate 210.494430816454
Replicate 39.921558157955
Condition 3: 24 Hour
Replicate 16.0371314374006
Replicate 28.4886276085956
Replicate 37.153888958542


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_100059.p1 GENE.S_Transcript_100059~~S_Transcript_100059.p1 ORF type:complete len:275 (+),score=29.31 S_Transcript_100059:38-826(+)
ATGGCCTCACAGCTGAGCTCAGCCTTCACAGCCCCACCCCTCTCTCTCTCCTCCCCATCCCCAACCCAAAAACTCCCTTCAACCACCACCTCATCCCACGTCACAATCCGGTGTGGGCCAAGAGACAACCGTGGCCCACTAGTAAAGGGCCGTATCCTAAGCACGGAAGCAATCCAAGCCGTCCAAGCCCTAAAGCGGTCCCACAAATCCAACGACCCAAACAACCTCACCATCACCAAAACCCTCTCTCGTCTCATAAAAGCCGACCTCCTGGCTACTCTACGGGAGCTCCTACGACAAGGCCACTGTGACCTCGCCCTCCAAGTTTTCTCCACCGTCCGATCTGAGCCCTGGTACACCCACCCTGATCTATCCCTCTACGCCGACTTAACCTTGGCTTTGGATACCAATAACATGAGGGACGATATTGACCGTCTGATTGAGGAGCTTGAGATGGAAGATGGGGTCATTGATTGGAACGATAAGAAGGGGTTGAGCAGATTGATCAGAGCATTGATTGGGGCGCAAATGAGGGAATCAACGGTCAGGATTTATCGGGTTATGAAGAAGTGTGGGTGGGGGTGTAGTGGATCAGGGGTTGAAGTGGATGAGTATGTGGCTAAGGTGTTGAGTAAAGGACTCAAAAAGTTGGGGGAAGGTGAGTTAGCTAAGGAAGTTGATTTGGCTCTTGAGGCTTATCTCAAGGCTTTTTTTTTTTTTTGCAAGGGGCTTATCTCAAGGCTTGTTTGGGGAGAGTTGGGGTTTAGGCATTTGGCTTTAGCATTATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_100059.p1 GENE.S_Transcript_100059~~S_Transcript_100059.p1 ORF type:complete len:275 (+),score=29.31 S_Transcript_100059:38-826(+)
MASQLSSAFTAPPLSLSSPSPTQKLPSTTTSSHVTIRCGPRDNRGPLVKGRILSTEAIQAVQALKRSHKSNDPNNLTITKTLSRLIKADLLATLRELLRQGHCDLALQVFSTVRSEPWYTHPDLSLYADLTLALDTNNMRDDIDRLIEELEMEDGVIDWNDKKGLSRLIRALIGAQMRESTVRIYRVMKKCGWGCSGSGVEVDEYVAKVLSKGLKKLGEGELAKEVDLALEAYLKAFFFFCKGLISRLVWGELGFRHLALAL*

Click here to download the sequence:
Link to NCBI Protein BLAST