Transcript Information: S_Transcript_100228.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-19
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.057479484309245
Replicate 20.66712538618835
Replicate 30.79666246581428
Condition 2: 8 Hour
Replicate 10.78300569198976
Replicate 20.72478991273412
Replicate 30.96680950260175
Condition 3: 24 Hour
Replicate 10.37744939076621
Replicate 20.58739900413859
Replicate 30.38132680526093


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_100228.p1 GENE.S_Transcript_100228~~S_Transcript_100228.p1 ORF type:complete len:463 (+),score=105.47,UBN2_3|PF14244.2|1.2e-35,Retrotrans_gag|PF03732.13|1.4e-08,Retrotrans_gag|PF03732.13|1.1e+03,UBN2|PF14223.2|0.0049,UBN2|PF14223.2|6.7,UBN2|PF14223.2|1.1e+04 S_Transcript_100228:189-1577(+)
ATGAGCGCTACCAGGAATTCAATTTCTTTTGCAGACATGCAAAATCCTTTGTTCCTGCATCCAAGTGATGGTCCTTCTTCTATTGCTCTGTCTGATAAGCTGATTGGAGCTTCGAATTATAGATCATGGCGACGAGCAATGGAAATCAATCTGGCAGCAAAGCGTAAGCTAGGTTTTGTCAATGAAACAGTAACTAGACCTGATAATGATCCTGTCAAGGCAGATCAGTGGGACACAGCTAATAGCACTGTGATTTCGTGGATTCTCAATTCTGTTTCTGACTCAATTCAAAGGTCTGTTCTCTTTATTGACACTGCTGTTGGAATTTGGAAACAACTTGAAACTAAATTCGCTTTAAGCAATGGATCAAGGAAGTACAAGTTGAATAGAGATGTTTATGATCTGAGACAAGAACATATTGCTATTAGTGACTTTTATACTCGGATGAAAAGTCTTTGGGAAGAATTGGAATCTTTGACAATTTTACCTAAACTGACTGTGGTGACACCTGAAATGCAGAATTTTCTGAATGCTCTTCATAAACATCAAGAGGAATTAAGACATTTTCAATTCCTGAATGGCCTTGATAATGTGTACCAGAATCAGAGAAGTAATATTCTCATGATGATTCCTTTGCCTTCTGTTGAAGAAGCCTGCTCTCTTATTCAGCAGGAAGAGTCACAAAAGGATATTTTAGGTGATATTCCTAAAATTGTTGTTGAGCCTTCTGCACTCTACAGTCGAGGTGACAAGCCTGTCAAGCCTTATGCCAATGCTGTGTGCAACAAATGTGGAGGCAAAGGTCATACTGTTGATCGATGCTGGAAAGTCATTGGTTATCCAAAGTGGCATCCTATGCATAAAAAGGGACCATCTCAGGTGCATCATCCTCAATCCAAACATCAGAATTGGGATAAAGGAAAAAAATCTGTCAATGTTAACAATGCAGCAAGCAGTACTTCTGGCAACATTGTCTTCACTCAGGATCAATTTGCTCAACTTCTAAGGAGTATTCCTGGTTCTTCTGGTTCTTCTTTTGCTCAGTCTCTCAGTTCTGAAACTGATGATGAAATTGAGGCCAACTTTGCAGGTATAGCCTTCTGCAATCATGTTGCTTCTTTGTCTGATGAATGGATAATTGACTCGGGCGCATCTGATCACATGACAGCAGATGTGACTAAGCTTGCTCATATTAAACATGTTGATACTAAAATAAAAATCAACTTGCCTGATGGTCATACTTCTCCTATTACTCATGTTGGCACTGCAATCTTGTCTAATGACATAATTTTGCAAAATGTTCTCTGTGTGCCGAGCTTCAAACACAACCTTCTTTCAGTTGCTAAACTTGTTCAACATGGCAACTATATTGTGCTATTTTATGATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_100228.p1 GENE.S_Transcript_100228~~S_Transcript_100228.p1 ORF type:complete len:463 (+),score=105.47,UBN2_3|PF14244.2|1.2e-35,Retrotrans_gag|PF03732.13|1.4e-08,Retrotrans_gag|PF03732.13|1.1e+03,UBN2|PF14223.2|0.0049,UBN2|PF14223.2|6.7,UBN2|PF14223.2|1.1e+04 S_Transcript_100228:189-1577(+)
MSATRNSISFADMQNPLFLHPSDGPSSIALSDKLIGASNYRSWRRAMEINLAAKRKLGFVNETVTRPDNDPVKADQWDTANSTVISWILNSVSDSIQRSVLFIDTAVGIWKQLETKFALSNGSRKYKLNRDVYDLRQEHIAISDFYTRMKSLWEELESLTILPKLTVVTPEMQNFLNALHKHQEELRHFQFLNGLDNVYQNQRSNILMMIPLPSVEEACSLIQQEESQKDILGDIPKIVVEPSALYSRGDKPVKPYANAVCNKCGGKGHTVDRCWKVIGYPKWHPMHKKGPSQVHHPQSKHQNWDKGKKSVNVNNAASSTSGNIVFTQDQFAQLLRSIPGSSGSSFAQSLSSETDDEIEANFAGIAFCNHVASLSDEWIIDSGASDHMTADVTKLAHIKHVDTKIKINLPDGHTSPITHVGTAILSNDIILQNVLCVPSFKHNLLSVAKLVQHGNYIVLFYD*

Click here to download the sequence:
Link to NCBI Protein BLAST