Transcript Information: S_Transcript_102142.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value1E-48
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.474404500564
Replicate 22.0779358586025
Replicate 32.1967801983236
Condition 2: 8 Hour
Replicate 12.5401434449771
Replicate 21.1774657178804
Replicate 33.1294734710914
Condition 3: 24 Hour
Replicate 12.4809978479622
Replicate 22.4484450179433
Replicate 32.5152177246099


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_102142.p1 GENE.S_Transcript_102142~~S_Transcript_102142.p1 ORF type:complete len:361 (+),score=34.67,DDE_Tnp_4|PF13359.2|2.7e-31,Plant_tran|PF04827.10|1e-10,DDE_Tnp_1|PF01609.17|5.2e-08 S_Transcript_102142:1444-2526(+)
ATGACTTCATATCTAACAGGAGAAAAATGGATGAATGAAATTTTGAATGGCCATGAAATACGTTGTTTTAATATGTTTAGAATGAATCCGGATACCTTCCGTCACTTATGTTTTGACTTGGAAAGAAAGTATGGTTTGAGGTCTTCAGATAGAATATCGACTTTGGAGAAAGTAGGTATATTTGTATATGTGCTTAGTAAGGGTGCGTCGAATGGAGACTCTCAAGAACGCTTCCAACACTCCGGTGAAACCATCAGTAGAATATTTAAAGAAGTGTTGTGCGCTATGGAAGGTCTTTCGAGGGACATACTTGTGCCCAAGGATCCTGAATTCAAAGAAATTCCTCGACAAATTGCTAGTGATACAAGATATATGCCTCATTTTAAGGATTGTATTGGAGCTATTGATGGTACCCATATATCAGTAATTGTTTCGGAGGAGGATCAAATTCGGTATAGAGGAAGAAAGTTGACACCCACTACAAATGTCTTAGCAGTATGTGACTTTGATTTGCTTTTCACATATGTTTTAACTGGGTGGGAAGGATCAGCTCATGATACACGTATTTTTCTTGACACAATCAACGATCCAAGTCTCAAGTTTCCAAAACCTTCGGCAGGTAAATATTACTTGGTAGATAAAGGTTATCTAGAAAGAGAGGGATATCTAACACCTTATCCAAAAGTAAGATACCATCAATCAGAGTTTCGAGGCACGAATCCAAGAGGATCTCGAGAAATTTTTAATCGAGCACATTCATCATTAAGAAGTTGTATTGAAAGGGCATTCGGTGTTCTCAAGGCCAGATGGAAGATATTGGATAAAATGCCTAAATATTCATTGATGGATCAAAATAAAATTATTTGTTCATGTTTTGCATTGCATAACTATATTAGAAAAAACACAATTGGGGATCCTGCTTTCAGACTAATGGACGAAAATCCCGATTTTATACCACCAGAAGTCATGCAAGATATTGAAAGTGAATTTACTGAAGCTGCACAAGAATATAGAAGTGAAGAGATGACTACTGTACGTGATAATATTGCTGCTAGTTTAATGACAACTAGAAGGCACTTCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_102142.p1 GENE.S_Transcript_102142~~S_Transcript_102142.p1 ORF type:complete len:361 (+),score=34.67,DDE_Tnp_4|PF13359.2|2.7e-31,Plant_tran|PF04827.10|1e-10,DDE_Tnp_1|PF01609.17|5.2e-08 S_Transcript_102142:1444-2526(+)
MTSYLTGEKWMNEILNGHEIRCFNMFRMNPDTFRHLCFDLERKYGLRSSDRISTLEKVGIFVYVLSKGASNGDSQERFQHSGETISRIFKEVLCAMEGLSRDILVPKDPEFKEIPRQIASDTRYMPHFKDCIGAIDGTHISVIVSEEDQIRYRGRKLTPTTNVLAVCDFDLLFTYVLTGWEGSAHDTRIFLDTINDPSLKFPKPSAGKYYLVDKGYLEREGYLTPYPKVRYHQSEFRGTNPRGSREIFNRAHSSLRSCIERAFGVLKARWKILDKMPKYSLMDQNKIICSCFALHNYIRKNTIGDPAFRLMDENPDFIPPEVMQDIESEFTEAAQEYRSEEMTTVRDNIAASLMTTRRHF*

Click here to download the sequence:
Link to NCBI Protein BLAST