Transcript Information: S_Transcript_102144.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value6E-29
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.34413363666182
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10.45959892924856
Replicate 20.28929114620336
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20.39075537200599
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_102144.p1 GENE.S_Transcript_102144~~S_Transcript_102144.p1 ORF type:complete len:232 (+),score=15.66,DDE_Tnp_4|PF13359.2|2.7e-10 S_Transcript_102144:1224-1919(+)
ATGACTTCATATCTAACAGGAGAAAAATGGATGAATGAAATTTTGAATGGCCATGAAATACGTTGTTTTAATATGTTTAGAATGAATCCGGATACCTTCCGTCACTTATGTTTTGACTTGGAAAGAAAGTATGGTTTGAGGTCTTCAGATAGAATATCGACTTTGGAGAAAGTAGGTATATTTGTATATGTGCTTAGTAAGGGTGCGTCGAATGGAGACTCTCAAGAACGCTTCCAACACTCCGGTGAAACCATCAGTAGAATATTTAAAGAAGTGTTGTGCGCTATGGAAGGTCTTTCGAGGGACATACTTGTGCCCAAGGATCCTGAATTCAAAGAAATTCCTCGACAAATTGCTAGTGATACAAGATATATGCCTCATTTTAAGGATTGTATTGGAGCTATTGATGGTACCCATATATCAGTAATTGTTTCGGAGGAGGATCAAATTCGGTATAGAGGAAGAAAGTTGACACCCACTACAAATGTCTTAGCAGTATGTGACTTTGATTTGCTTTTCACATATGTTTTAACTGGGTGGGAAGGATCAGCTCATGATACACGTATTTTTCTTGACACAATCAACGATCCAAGTCTCAAGTTTCCAAAACCTTCGGCAGGTAGATTATTTCGTATCTTGATTTTTTTAATTTGTTACTTCTCTCTTATATTGGTTCATATTGTAAAATTCAGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_102144.p1 GENE.S_Transcript_102144~~S_Transcript_102144.p1 ORF type:complete len:232 (+),score=15.66,DDE_Tnp_4|PF13359.2|2.7e-10 S_Transcript_102144:1224-1919(+)
MTSYLTGEKWMNEILNGHEIRCFNMFRMNPDTFRHLCFDLERKYGLRSSDRISTLEKVGIFVYVLSKGASNGDSQERFQHSGETISRIFKEVLCAMEGLSRDILVPKDPEFKEIPRQIASDTRYMPHFKDCIGAIDGTHISVIVSEEDQIRYRGRKLTPTTNVLAVCDFDLLFTYVLTGWEGSAHDTRIFLDTINDPSLKFPKPSAGRLFRILIFLICYFSLILVHIVKFR*

Click here to download the sequence:
Link to NCBI Protein BLAST