Transcript Information: S_Transcript_10218.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value2E-27
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.661300123518
Replicate 23.2064587490255
Replicate 33.5164150132732
Condition 2: 8 Hour
Replicate 13.2698931819604
Replicate 23.9374453605919
Replicate 34.604223082676
Condition 3: 24 Hour
Replicate 15.5922901735921
Replicate 24.5025438998344
Replicate 34.4390798153004


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_10218.p1 GENE.S_Transcript_10218~~S_Transcript_10218.p1 ORF type:5prime_partial len:750 (+),score=120.92,rve|PF00665.22|1.6e-24,gag_pre-integrs|PF13976.2|4.2e-15,UBN2_2|PF14227.2|1.4e-11,RVT_2|PF07727.10|1e-09 S_Transcript_10218:3-2252(+)
TTAGTTGATTTGGAGAATTTGGATGTTACCATTGGTGACGAAGATAAGGCCGTTTTGTTGGTTGTGTCCTTGAACCCTATGAAGTATAAACACTTCAAGGAGATCATGTTATATGGCAATAGGACTACCTTAACTTTTCAAGAAGTTAAAAATAACCTATTTTCTAAAGAGAAATTTGATGCCGAACATGATAAAACGGATTCAAGAGATGAGGGTTTGTTTGTTAGAGGTAGACCCTCTAATAAATCAGATAAGAAAAACCGTGGTGGTAGATCAAAGTCTAGGGGTAAGTCCAAAAACCATAAATTTTGCAGGTTTTGTAGAAAACCCGGACATGAGATTGATGAGTGTTTTAAGCTCAAAAATAAACAAGAAAGAGAAGAAAAGGCTAAGGGTAAGAAACCTATAGATTCATCCGCTGAAGCGAGTGTGGTTGATGAACACTCCGATGGTGAGTTATATGTGGCCATAGATTCTGATGATAAGGCTAGGTCACAATGGATTCTTGACTCGGGTTGCACTTTTCATATGTGTCCACACCGGGATTGGTTTGACTCCTATGAGAGGGTTGAAGGTGGCACCGTTTATATGGGAAATAATGCCACTTGTAAGGTTGTTGGGAGAGGGAATGTAAAAATTAAAACTCATGATGGAACCACCCGTACTCTTTCGGGTGTCAGACATGTTCCCGACCTTCGTAGAAACCTTATTTCACTTGGTACCCTTGAATCTTTGGGTTGTCACTACTCCGCTCAAGGTGGAGTCCTTAAGGTGTCTAAGGGTTCACTTGTTTTGATGAAAGGATCTAGAGTTGGATCGTTGTATGTGTTGCAAGGTTTTACCGTCACCGGTTCCACCGCCGTGGCCACTATTTCCAATACAAATGAGCCCAAACTATGGCATATGCGTTTGGGTCATATGGGTGAGAAAGGTATGGCTATTCTTTGTAAACGTGGTTTGCTTGGCTCACTTACTAATTGTGATATTGATTTTTGTGAGTATTGTGTTTATGGTAAGCAAAAGAAAGTAAACTTCTCACCAGGCATACATAGAAACAAGGCAAAACTTGATTATGTCCACTCCGACTTGTGGGGTCCTTCACAAGTTGCCAATGGCGGAGGTAATTGCTATATGATGACTATTATTGATGATTACTCACGAAAAGTCTGGGTATATTTCTTGAAACATAAAAATGAGGCCCTGGGCAAATTCAAAGAGTGGAAAACCTTAATTGAGAATCAGACCGGGAAAAAGCTTAAGAGGTTAAGGACCGATAATGGCCTTGAATTTTGTGATAATGAATTTAAGGAATTTTGCAAGAAGGAAGGTATTGCTAGGCACCTCACTATTGTTGGCAAGCCACAACAAAATGGCGTTGCCGAAAGAATGAACTGTACAATCATGGAGAAGGTTCGTTGTATGCTCTCTACCGCTGGTTTATGGGAACGGCGTCATTTGTGGGGTGAAGCGGCCAATACCGCTTGTTATCTTATCAATCGCTCACCTCATCGTTCACTTGATGGTAAGATTCCCGAAGAGGTTTGGTCCGGTAAGCCAATTGATTTGTCTAATCTTCATGTATTTGGTTGTCCGGCTTATATTCATGTAAATGAGGGAAAACTGTCACCTCGTGCTAGAAAGTGTATCTTTGTAGGCTATGGTAGTGGTGTTAAGGGATTTCGTGTTTATGATCCCGAGACACGTAAGATTTTTCATAGTAGAGATATTACTTTCAATGAGGATGTTACGCCTTCGGGTATTTTGTCTTTCTATTCTAATCCTCTTGTAGGAGATGACAAGAGTACTCAAGAGAAGGTGGAGTCTCCCTCTACATCAAGTGTTCCTTCCACCTCAAGTTTCCAAGATCAACCATCTTCAAGCTCTACTACTCCTATCCAACCTTCAATAGCTCGTGATCGTGAGAAAAGAGCTCGCAAGGTTCCAGAGAGATTGAAGGACTATGATTGTGATCTCGTGGCCTATGCTTTCGCCGTTGCTTTTGAGATTGAAAGCATTCAAGAGCCCGAGACCTACAAAGAGGCCATTGCTAGTGAAGAAAGTGCCAAGTGGTTGATAGCCATGCATGAAGAGATTGAAAGCATCCACAAGAATGACACTTGGGAGGTTGTTGATCTTCCTAAAGGCAAGAGAGCCATTACATGCAAATGGATTTTCAAAGTCAAAGATGGAATTCCCGTGGTTGAGCCTAAGAGATTCAAGGCTCGTTTTGTTGCTCGTGGTTTCACTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_10218.p1 GENE.S_Transcript_10218~~S_Transcript_10218.p1 ORF type:5prime_partial len:750 (+),score=120.92,rve|PF00665.22|1.6e-24,gag_pre-integrs|PF13976.2|4.2e-15,UBN2_2|PF14227.2|1.4e-11,RVT_2|PF07727.10|1e-09 S_Transcript_10218:3-2252(+)
LVDLENLDVTIGDEDKAVLLVVSLNPMKYKHFKEIMLYGNRTTLTFQEVKNNLFSKEKFDAEHDKTDSRDEGLFVRGRPSNKSDKKNRGGRSKSRGKSKNHKFCRFCRKPGHEIDECFKLKNKQEREEKAKGKKPIDSSAEASVVDEHSDGELYVAIDSDDKARSQWILDSGCTFHMCPHRDWFDSYERVEGGTVYMGNNATCKVVGRGNVKIKTHDGTTRTLSGVRHVPDLRRNLISLGTLESLGCHYSAQGGVLKVSKGSLVLMKGSRVGSLYVLQGFTVTGSTAVATISNTNEPKLWHMRLGHMGEKGMAILCKRGLLGSLTNCDIDFCEYCVYGKQKKVNFSPGIHRNKAKLDYVHSDLWGPSQVANGGGNCYMMTIIDDYSRKVWVYFLKHKNEALGKFKEWKTLIENQTGKKLKRLRTDNGLEFCDNEFKEFCKKEGIARHLTIVGKPQQNGVAERMNCTIMEKVRCMLSTAGLWERRHLWGEAANTACYLINRSPHRSLDGKIPEEVWSGKPIDLSNLHVFGCPAYIHVNEGKLSPRARKCIFVGYGSGVKGFRVYDPETRKIFHSRDITFNEDVTPSGILSFYSNPLVGDDKSTQEKVESPSTSSVPSTSSFQDQPSSSSTTPIQPSIARDREKRARKVPERLKDYDCDLVAYAFAVAFEIESIQEPETYKEAIASEESAKWLIAMHEEIESIHKNDTWEVVDLPKGKRAITCKWIFKVKDGIPVVEPKRFKARFVARGFT*

Click here to download the sequence:
Link to NCBI Protein BLAST