Transcript Information: S_Transcript_102190.p1


Annotated TAIR IDAT3G16890.1
Annotated Gene Namepentatricopeptide (PPR) domain protein 40
Annotated Gene Symbol(s)PPR40
Annotation TypeOrtholog
Chromosome Positionchr3:5768401-5770380 | Reverse length=659
E-Value2.6E-250
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.9570001372423
Replicate 23.8872533982288
Replicate 33.4836279269023
Condition 2: 8 Hour
Replicate 13.1480338087196
Replicate 24.2968153736618
Replicate 34.7706897020672
Condition 3: 24 Hour
Replicate 12.9819999685573
Replicate 23.3456102803179
Replicate 33.7632891652078


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_102190.p1 GENE.S_Transcript_102190~~S_Transcript_102190.p1 ORF type:5prime_partial len:630 (+),score=97.85,PPR_2|PF13041.2|1.8e-11,PPR_2|PF13041.2|5.4e-17,PPR_2|PF13041.2|1.5e-15,PPR_2|PF13041.2|0.6,PPR_2|PF13041.2|6.4e-14,PPR_2|PF13041.2|1.3e-12,PPR_2|PF13041.2|6.8e-20,PPR_2|PF13041.2|9.5e-15,PPR_2|PF13041.2|4.6e-13,PPR_2|PF13041.2|0.00062,PPR_2|PF13041.2|16,PPR_1|PF12854.3|0.41,PPR_1|PF12854.3|7.8e-14,PPR_1|PF12854.3|2.1e-15,PPR_1|PF12854.3|66,PPR_1|PF12854.3|7.6e+03,PPR_1|PF12854.3|5.8e+03,PPR_1|PF12854.3|0.045,PPR_1|PF12854.3|1.9e-07,PPR_1|PF12854.3|1.1e-11,PPR_1|PF12854.3|1.4e-09,PPR_1|PF12854.3|5.3e-09,PPR_1|PF12854.3|1.5e-05,PPR_1|PF12854.3|9.1e+02,PPR|PF01535.16|2e+03,PPR|PF01535.16|0.18,PPR|PF01535.16|6.2e-07,PPR|PF01535.16|5e-08,PPR|PF01535.16|2.9e+03,PPR|PF01535.16|4.6e+03,PPR|PF01535.16|2.7e+02,PPR|PF01535.16|5.4e+02,PPR|PF01535.16|0.00031,PPR|PF01535.16|0.0012,PPR|PF01535.16|1.1e-07,PPR|PF01535.16|9.1e-06,PPR|PF01535.16|1.9e-05,PPR|PF01535.16|0.006,PPR|PF01535.16|12,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|8.1e-05,PPR_3|PF13812.2|9e-07,PPR_3|PF13812.2|1.8e+03,PPR_3|PF13812.2|2e+02,PPR_3|PF13812.2|2.2e-06,PPR_3|PF13812.2|0.018,PPR_3|PF13812.2|1.7e-05,PPR_3|PF13812.2|0.00019,PPR_3|PF13812.2|0.00061,PPR_3|PF13812.2|0.075,PPR_3|PF13812.2|3.5e+03,MRP-S27|PF10037.5|0.06,MRP-S27|PF10037.5|1e+03,MRP-S27|PF10037.5|1.4,MRP-S27|PF10037.5|0.048,MRP-S27|PF10037.5|1.8,MRP-S27|PF10037.5|49 S_Transcript_102190:2-1891(+)
ATTGATCATAACTCTCTTTCTCAAATTCTGCTTAGAAAGGACTGGCATTTGCTGCTTAATCACGAGTTAAAAGCTGGTAGGTTTGTTCTGAAGCCGCAATCTGTAGTGAGTATTTTGCAAAACCAAGAAAACCCATTACATACTATTAGATTTTATATCTGGGTTTTGAATATTGAGCCATCATATGCAAGGAATCAGCAAATTAGGGGTGTTCTTGCTAATACCCTTCATAGAAAAGGTCCGGTTTTGTTGTCTGTTGAATTGGTTAAGGATGTTAGGAGCTGTGGGTATGAGATTACTGAGGATTTCCTTTGCATTTTGTTTTGTAGTTGGGGTAGATTAGGACTAGCTAAGTATTGTGTTGAGATTTTTGGGCAAATTTCGTTTTTGGGTCTAAATCCTACTACTAGGTTGTACAATGCTTTGCTTGATGCTTTGGTTAAATCGAATTCGCTTGACTTGGCATATTTGAAGTTCCAGCAGATGCCTTCTGATTGTTGTAAACCTGATAGGTTTACTTATAATATCCTGATTCATGGGGTTTGCAAGGCTGGTGTCGTTGATGAAGCACTTCGGTTGGTTAAACAAATGGAGAATTTAGGTTATGTTCCTAATGTGTTTACGTATACGATTTTAATTGATGGGTATTGTAGTGCGAATAGGATGGATGATGCCTTTAGGCTTTTGGAGACAATGAGAGAAAAGAAAGTGGCTCCAAATGATGCCACGTTTAGGTCATTGGTACATGGAGTGTTTCATTGTCTTGGACCAAGAAAGGCATTTGAAGTGTTATCTGCATTTGTTGAGAGGGAATCGGTTTTGCCTAAAGTGGCTTGTGACACTATATTGTATTGCCTGTCAAATGAATCAATGGCGAATGAGGCTGCCTTTTTTTTGAGAAAATGTAGGGGGAAAGGCTATATGCCTGACAGTTCAGTTTTTAATGTCGCAATGACCTGTTTAATAAAGAAGCTTGATCTTGAGGAGACTTGTGAAATTTTGGATAGTTTTCTTGGACAAGGTCTGAATCTAGCTTTGCATACCTATGTTGCTATTATTGAAGCATTGTTCAGAGGTGGATATGCTAGACAAGGAAGTCATTATCTGGACCAGATTTTCAAGGCTGGTGTCATATCTAATGTATTCTCATATAATATGGTAATCGATTGCTTGTTGAAAGCTAAGATCACTGAGAGGGCACTAACACTGTTTACAGAGATGCAGCAAAGAGGCATCACTCCAAATCTTGCTACTTTTAATACACTAATTGATGGACATTTTAAAGCTGGGGAAATAGGAAGGGCACAAGAACTTCTGATGATGCTCTTGCAGCATGGATTCAAGCCAGATATTTTCACTTTTAATTCATTAGTGGATGGCCTTTGTAGGGCAAACAAGATTCAGGATGCTTTTGATTGTTTTGCAGAAATGAAGGAGTGGGGGGTTAGCCCGAATACTGTCACGTACAATATCTTAATCCGCTGTTTGTGCATTGTTGGGGATATTGCTAGGTCTATGGCATTGTTCAGAAAGATGCAAGCTGATGGAATTAGCCCAGATATACACTCATTCAATTCACTGATTCAAAGCTTTTGCAAAATGAATAAGATTGCAAAGGCTCGCAACCTGTTTGATTCCATGCTTGCATTAGGACTGACTCCAAATAATGTCACATATGGTTCTCTCATTAAATTGGCATGTGACACTGGGAGGTATCATGATGCGAGGGATATTTTCTTGTCAATGGAAGCTAATCAACGTGTTCCAGATGCAACTATGTGTAATTTATTTGTTGATACTCTAGTAAAACTGGGTCAGCTAAAAGAAGCCAAAGATTTCACACGCAAATGCGAAAAATGGGGAATATTTGTGGAGCCAATCAAAATTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_102190.p1 GENE.S_Transcript_102190~~S_Transcript_102190.p1 ORF type:5prime_partial len:630 (+),score=97.85,PPR_2|PF13041.2|1.8e-11,PPR_2|PF13041.2|5.4e-17,PPR_2|PF13041.2|1.5e-15,PPR_2|PF13041.2|0.6,PPR_2|PF13041.2|6.4e-14,PPR_2|PF13041.2|1.3e-12,PPR_2|PF13041.2|6.8e-20,PPR_2|PF13041.2|9.5e-15,PPR_2|PF13041.2|4.6e-13,PPR_2|PF13041.2|0.00062,PPR_2|PF13041.2|16,PPR_1|PF12854.3|0.41,PPR_1|PF12854.3|7.8e-14,PPR_1|PF12854.3|2.1e-15,PPR_1|PF12854.3|66,PPR_1|PF12854.3|7.6e+03,PPR_1|PF12854.3|5.8e+03,PPR_1|PF12854.3|0.045,PPR_1|PF12854.3|1.9e-07,PPR_1|PF12854.3|1.1e-11,PPR_1|PF12854.3|1.4e-09,PPR_1|PF12854.3|5.3e-09,PPR_1|PF12854.3|1.5e-05,PPR_1|PF12854.3|9.1e+02,PPR|PF01535.16|2e+03,PPR|PF01535.16|0.18,PPR|PF01535.16|6.2e-07,PPR|PF01535.16|5e-08,PPR|PF01535.16|2.9e+03,PPR|PF01535.16|4.6e+03,PPR|PF01535.16|2.7e+02,PPR|PF01535.16|5.4e+02,PPR|PF01535.16|0.00031,PPR|PF01535.16|0.0012,PPR|PF01535.16|1.1e-07,PPR|PF01535.16|9.1e-06,PPR|PF01535.16|1.9e-05,PPR|PF01535.16|0.006,PPR|PF01535.16|12,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|8.1e-05,PPR_3|PF13812.2|9e-07,PPR_3|PF13812.2|1.8e+03,PPR_3|PF13812.2|2e+02,PPR_3|PF13812.2|2.2e-06,PPR_3|PF13812.2|0.018,PPR_3|PF13812.2|1.7e-05,PPR_3|PF13812.2|0.00019,PPR_3|PF13812.2|0.00061,PPR_3|PF13812.2|0.075,PPR_3|PF13812.2|3.5e+03,MRP-S27|PF10037.5|0.06,MRP-S27|PF10037.5|1e+03,MRP-S27|PF10037.5|1.4,MRP-S27|PF10037.5|0.048,MRP-S27|PF10037.5|1.8,MRP-S27|PF10037.5|49 S_Transcript_102190:2-1891(+)
IDHNSLSQILLRKDWHLLLNHELKAGRFVLKPQSVVSILQNQENPLHTIRFYIWVLNIEPSYARNQQIRGVLANTLHRKGPVLLSVELVKDVRSCGYEITEDFLCILFCSWGRLGLAKYCVEIFGQISFLGLNPTTRLYNALLDALVKSNSLDLAYLKFQQMPSDCCKPDRFTYNILIHGVCKAGVVDEALRLVKQMENLGYVPNVFTYTILIDGYCSANRMDDAFRLLETMREKKVAPNDATFRSLVHGVFHCLGPRKAFEVLSAFVERESVLPKVACDTILYCLSNESMANEAAFFLRKCRGKGYMPDSSVFNVAMTCLIKKLDLEETCEILDSFLGQGLNLALHTYVAIIEALFRGGYARQGSHYLDQIFKAGVISNVFSYNMVIDCLLKAKITERALTLFTEMQQRGITPNLATFNTLIDGHFKAGEIGRAQELLMMLLQHGFKPDIFTFNSLVDGLCRANKIQDAFDCFAEMKEWGVSPNTVTYNILIRCLCIVGDIARSMALFRKMQADGISPDIHSFNSLIQSFCKMNKIAKARNLFDSMLALGLTPNNVTYGSLIKLACDTGRYHDARDIFLSMEANQRVPDATMCNLFVDTLVKLGQLKEAKDFTRKCEKWGIFVEPIKI*

Click here to download the sequence:
Link to NCBI Protein BLAST