Transcript Information: S_Transcript_103000.p1


Annotated TAIR IDAT1G08130.1
Annotated Gene NameDNA ligase 1
Annotated Gene Symbol(s)ATLIG1, LIG1
Annotation TypeOrtholog
Chromosome Positionchr1:2542913-2547815 | Reverse length=790
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.2945455113258
Replicate 26.9029185137832
Replicate 36.2585458189836
Condition 2: 8 Hour
Replicate 19.7773450190465
Replicate 212.787759451107
Replicate 312.825419738256
Condition 3: 24 Hour
Replicate 14.9946183672839
Replicate 26.4909592721669
Replicate 36.2523960859855


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_103000.p1 GENE.S_Transcript_103000~~S_Transcript_103000.p1 ORF type:5prime_partial len:831 (+),score=199.87,DNA_ligase_A_M|PF01068.17|2.8e-63,DNA_ligase_A_N|PF04675.10|4e-40,DNA_ligase_A_C|PF04679.11|3.8e+03,DNA_ligase_A_C|PF04679.11|1.9e-24 S_Transcript_103000:2-2494(+)
TTCCCGCCATTTTTTAACCTTGGGTACGCCTACGCCATTACCATTGACACCCAACCCTTAGCCAACATTCTTTCTTCTCTTCCTGTGTCTGGCAAAATTGGCATGTTGAGACTCACATTCACTTTCCGTCCAATAATCAATAACACAACTCTCAAATTCAAACTACCTCTCCATTCATCATCTCTCACTCTCCCCAAAACCCTCACTCTCTCTCCAAAACCCAGAACCCTAATCCCCCTTCGAGCTATGTCTTCTCTCCCTTCGGCTTTCGATGCTCTCATGTCCGGTGCCCGTCAAGCTGCCAAGAAAAAATCCCAAAACCCTATTCCCCCTTCCCCCAAAAAGCGAAAATCTCCTGACCCAATTCAACCCAATTCTGAAAACCCTAAATCCATTTCAGATTCTCCTCAAAATCCCCAGAGTTCCAATCTTTCTCGAAAATCTCCTGACCCGATTCAACCCAAATCAGAAAATCCTAAACCCACTTCAGATTCTCCTCAAAACCCATTTTCTAAAAAGCCCAAAATTGTTGCTGCTGTATTAAATGTGGATGAATTTGTTGGCCAATTGAAGACGAAACCAGCCAATTTTGACCCCAAAAAGGCTGTTTGGTGGGAGCATGGGGACAAGGTTCCCTTTCTTTTTCTTGCAAGGGCTCTTGATTTGATCAAAGACGAGTCGGGTCGGATTGCGATTACTGATATTACTTGTAATGTGTTGAGGGCTGTGATTAAAACAACCCCAGATGATTTGTTAGGGGTTGTTTATCTTTTGGCCAACAAGATTGCTCCTGCTCATGAAGGTGTCGAGCTCGGTATCGGTGATGCTTCTCTGATTAAAGCCCTTGCTGAGGCTTGTGGAGCTACTGAGGCAGTTGTCAAGAAGTCTTATAAGGTTTTAGGTGATTTGGGAGATGTTGCTAAAGAAATTCGTTCAAAGCAAAGCATGATGCGCCAACCCCCTCCATTGACAGTCGCTAAAGTTTTCAGTACATTCCAGCAGATTGCCAAGGCATCGGGAAAAGACAGTCAAGAAAGGAAAAAGAGCCTTATTAAGTCGCTTCTTGTGGCTGCCAAAGATTGTGAACCTGTATATTTGATGCGGCTGCTTCAGTCAAAATTGAGGATTGGTTTAGCAGAGCAAACTCTTCTTGTTGCTCTTGGACAAGCTGCTGTTTATGCTGAAGAGCATTCAAAGCCTCCTTCAGATGTTCAATCTCCACTAGAAGAGGCAGGGAAGATTGTGAAACAAGTATACTCTGTGCTTCCTGTTTATGATAAGATAATCCCTGCTCTGCTCAGTGGTGGTGTATGGGATCTATCAAAAACCTGCAACTTCACACCAGGTGTTCCTATTGGACCTATGCTGGCGAAGCCAACAAAAGGGGTATCAGAGATTATAGATAAATTTCAAGATATGGTCTTTACTTCTGAGTACAAATATGATGGAGAGCGTGCTCAAATTCATTACATGGAGGATGGTTCAGTTGAGATTTACAGTCGAAATGCTGAACGGAACACTGGGAAATACCCTGATGTTGTTGGTGCCATGGCTAGGTTCAAGAAGCCATCTGTGAACTCTTTTGTTTTGGATTGTGAAATTGTTGCATACGATCGTGAGAAACAGAAGATTCTTCCCTTTCAGATACTTAGCACCCGTGCTCGTAAAAACGTTGTAATGAGTGACATCAAGGTTGACGTTTGCATCTTCGCTTTTGACATGTTGTATCTGGATGGGAAGCCACTTCTTCAAGAGCAGCTTAACACCCGTAGAAAGCATCTTTATGATTCCTTTGTGGAAGAACCTGGGTTTTTTCACTTTGCTACAACACTCACATCAAGTGATCTTGAAGAAATTCAGAAGTTCCTTGAAGCTGCTGTCAATGCCAGTTGCGAGGGGTTAATAATCAAAACATTGGACAGAGAGGCTACTTATGAGCCCTCAAAGAGGTCTAATAACTGGCTTAAATTGAAAAAGGATTACATGGAGAGTGTTGGGGATTCTCTGGATCTGGTGCCCATTGCAGCATTCCATGGCCGTGGAAAAAGAACAGGTGTTTATGGAGCTTTTCTCCTAGCTTGTTATGATTGTGACAAGGAGGAATTCCAAACCATATGCAAAATAGGTACTGGATTTTCTGAAGCTGTGCTTGAAGAACGATCTTCCAGCCTTCGTTCTAAAGTGATTCCCAACCCAAAGCCATACTATCGATACGGAGATACCCTCACCCCGGACGTATGGTTTGAACCCTCTGAGGTGTGGGAGGTCAAAGCAGCTGACTTGACCATCAGTCCTGTTCACCGTGCTGCAGTTGGTACAGTTGATCCAGAGAAGGGAATTTCACTCCGATTTCCACGCCTGCTTCGTGTTAGAGAAGACAAGACTCCCGAGGAAGCAACATCATCTGATCAGGTGGCTGAAATGTACATTTCTCAAGCAAACGCCTCTAACAAGACGAGCAACAATCAAGATGAAATGGAAGAAGAGGACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_103000.p1 GENE.S_Transcript_103000~~S_Transcript_103000.p1 ORF type:5prime_partial len:831 (+),score=199.87,DNA_ligase_A_M|PF01068.17|2.8e-63,DNA_ligase_A_N|PF04675.10|4e-40,DNA_ligase_A_C|PF04679.11|3.8e+03,DNA_ligase_A_C|PF04679.11|1.9e-24 S_Transcript_103000:2-2494(+)
FPPFFNLGYAYAITIDTQPLANILSSLPVSGKIGMLRLTFTFRPIINNTTLKFKLPLHSSSLTLPKTLTLSPKPRTLIPLRAMSSLPSAFDALMSGARQAAKKKSQNPIPPSPKKRKSPDPIQPNSENPKSISDSPQNPQSSNLSRKSPDPIQPKSENPKPTSDSPQNPFSKKPKIVAAVLNVDEFVGQLKTKPANFDPKKAVWWEHGDKVPFLFLARALDLIKDESGRIAITDITCNVLRAVIKTTPDDLLGVVYLLANKIAPAHEGVELGIGDASLIKALAEACGATEAVVKKSYKVLGDLGDVAKEIRSKQSMMRQPPPLTVAKVFSTFQQIAKASGKDSQERKKSLIKSLLVAAKDCEPVYLMRLLQSKLRIGLAEQTLLVALGQAAVYAEEHSKPPSDVQSPLEEAGKIVKQVYSVLPVYDKIIPALLSGGVWDLSKTCNFTPGVPIGPMLAKPTKGVSEIIDKFQDMVFTSEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKYPDVVGAMARFKKPSVNSFVLDCEIVAYDREKQKILPFQILSTRARKNVVMSDIKVDVCIFAFDMLYLDGKPLLQEQLNTRRKHLYDSFVEEPGFFHFATTLTSSDLEEIQKFLEAAVNASCEGLIIKTLDREATYEPSKRSNNWLKLKKDYMESVGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDCDKEEFQTICKIGTGFSEAVLEERSSSLRSKVIPNPKPYYRYGDTLTPDVWFEPSEVWEVKAADLTISPVHRAAVGTVDPEKGISLRFPRLLRVREDKTPEEATSSDQVAEMYISQANASNKTSNNQDEMEEED*

Click here to download the sequence:
Link to NCBI Protein BLAST