Transcript Information: S_Transcript_103810.p1


Annotated TAIR IDAT4G24490.1
Annotated Gene NameRAB geranylgeranyl transferase alpha subunit 1
Annotated Gene Symbol(s)RGTA1, ATRGTA1
Annotation TypeOrtholog
Chromosome Positionchr4:12655330-12658103 | Reverse length=678
E-Value3.4E-242
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.6405934339145
Replicate 25.5863108694703
Replicate 36.4011772466551
Condition 2: 8 Hour
Replicate 17.4927047060197
Replicate 26.4919731472322
Replicate 37.7622432245736
Condition 3: 24 Hour
Replicate 15.2825465055491
Replicate 25.1259545386049
Replicate 34.0541835245777


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_103810.p1 GENE.S_Transcript_103810~~S_Transcript_103810.p1 ORF type:complete len:703 (+),score=124.11,PPTA|PF01239.18|1.5e-05,PPTA|PF01239.18|6.4e-09,PPTA|PF01239.18|4.9e-07,PPTA|PF01239.18|4.9e-10,PPTA|PF01239.18|3.6e-06,PPTA|PF01239.18|3.7e+03 S_Transcript_103810:134-2242(+)
ATGCATGGAAGACCCAGAAAACCCATAAAACCAGAAGATGAAGCAGCTTCAGTCGCCAAAGCCTCCAAATTACGTGCCCTTCAATCCCAGTTTCTTCACTTCCATCACAACAAAATATATGACAAAGAAGCAGTAGAGCTGAGTGCAAAGCTGTTGGAGACCAACCCAGAATTCTACACTGCTTGGAATTATCGCAAACTCGCTGTTGAATATTCACTGAGTCAACCCGGTTCCGATCCCGTTTCTCTTCTTAATGAGGAGCTCCGAGTTGTAGAGAGTGCACTCAGACAAAATTTCAAATCCTATGGAGCATGGCATCATCGCAAATGGGTGCTTAGCAGGGGTTATTCATCTGTAGATCATGAATTACGTCTTCTGGATAAGTTTCAGAAGGCCGATGCACGGAATTTTCATGCATGGAACTACCGCAGATATGTAGTAGAACTGAAGCATATTGCAGAAGTGGATGAGTTGAAGTATACAACTGATATGATAGAAAAAAATTTCAGTAATTATTCTGCGTGGCATAATCGAAGCATGATTCTGTCCAATTTGCTGAAAAAGAAAGCTGAAGGATTTTTTCCCAAAGAGAAGATCTTAACTGAGGAGTATGAACTAGTACACCAAGCAATTTTTACAGATCCAGATGACCAAAGTGGTTGGTTTTATCATCTTTGGCTACTTGAGCAAACAGTGACAAAGGATTCACCTTGGCTGGTCTCTTCCTGGCCTGCTCCACGTTCTGAGCTTATTGTATCAGCAAATAAAGCAGCACCTGATGATATGGTCTCACCATTCACAAGCTACTTGTCTAATGGAGGTACAATACCTGTGGTTCTCTATTTCAACCAAGCAGTCAAAGGTGTAAATTCAGCCACTGTTAATATCCGATCTGCAATTATAGAAAGTAGAGATATGGTTTGGAGACCTCTTTCAGGAAACAAATATGAGGGTGCTCAGGCATGGGTTGCATATCTGAAATTTTCCGATGTGCAAGTTGATTATTCCATGAGTTATCCAGTTGAAGTTAGCCTGGGAGACTCTCCTAAGATCATCTCTTTGAGTGGTTATCAGATGACTCAACATTTTCAAATTAAATTTATGGTCCGTTTTCAACAGCTGAATTCACAGCATGCAGAAGGCGGGAACATGAAGGCAATGTCATGGGACTATTTAGTTTTTCAAAAATGTGAGATGGTCCCTGACAAGTCAGATATGTTTTCCTCATTTAATCAATTGCAAATGAACAAGAGTCATGAACCTGTTGTTGCTAAGTGGCAGCTGGATATTTTGGCCAATGAGATTGAGCTCTTCCGCGAACTGCTATCAGCTATTGATTGCAAAATTGGAAAGCTGACACTTGCAAGATTGTTGACAGCTCTTGATACAATGGTGTCAGACAGCAGTGCTTCAAATTCTTCCCAAATGACACATACTGAAGAAATTTTGCCTTTGTATAACGATTTGATCAAATTAGATCCATCACATTCACAATACTACAAGGAAGAACACAGTTTAGCATTATTGCGTCAGGTTACTTGCTGCAAGGAGAATCTGTTGAGATATTGTTGGCGTCACAACAGCTCAGCCCAATCAGATAATGGGAACTTCATATGTATGCGTCTTAATAACCTATCACTAGCAAGGATAGGATCCATTAAGAATTTATTGTGGGTCCAAATGCTAGATCTCAGCCACAATGAACTTATATCTATTGAAGGGTTGGAAGCAATGCAACTGCTTTCTTGTTTGAACCTTAGTAACAACAAGATCAAGAGTTTTACTGCTCTAGAACCTCTAAGACATTTGAAGTCACTTAGAGCACTGAATATCTCAGACAATGAGATCGGGAAACATTCAATAGACACGACGAGGTATTTGTGCTCCTCTCCTTTGTCTCACACTGTGGCAAGTGACTGGAAGTCCAACATATCTTGTGTGGAGGATGCTCAACTGTCAAAATACTGGGATGCCTATCTCGTATTCAGAGATCTAAGTTTGACGCAGCTTGAGGTGTCAGGCAATGCAGTTGATGATGAAGATCTTAGATCATTCTTGCGCAAAATTTTGCCGACATTGAAGTGGCTTGATGGTAGAATTCATAGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_103810.p1 GENE.S_Transcript_103810~~S_Transcript_103810.p1 ORF type:complete len:703 (+),score=124.11,PPTA|PF01239.18|1.5e-05,PPTA|PF01239.18|6.4e-09,PPTA|PF01239.18|4.9e-07,PPTA|PF01239.18|4.9e-10,PPTA|PF01239.18|3.6e-06,PPTA|PF01239.18|3.7e+03 S_Transcript_103810:134-2242(+)
MHGRPRKPIKPEDEAASVAKASKLRALQSQFLHFHHNKIYDKEAVELSAKLLETNPEFYTAWNYRKLAVEYSLSQPGSDPVSLLNEELRVVESALRQNFKSYGAWHHRKWVLSRGYSSVDHELRLLDKFQKADARNFHAWNYRRYVVELKHIAEVDELKYTTDMIEKNFSNYSAWHNRSMILSNLLKKKAEGFFPKEKILTEEYELVHQAIFTDPDDQSGWFYHLWLLEQTVTKDSPWLVSSWPAPRSELIVSANKAAPDDMVSPFTSYLSNGGTIPVVLYFNQAVKGVNSATVNIRSAIIESRDMVWRPLSGNKYEGAQAWVAYLKFSDVQVDYSMSYPVEVSLGDSPKIISLSGYQMTQHFQIKFMVRFQQLNSQHAEGGNMKAMSWDYLVFQKCEMVPDKSDMFSSFNQLQMNKSHEPVVAKWQLDILANEIELFRELLSAIDCKIGKLTLARLLTALDTMVSDSSASNSSQMTHTEEILPLYNDLIKLDPSHSQYYKEEHSLALLRQVTCCKENLLRYCWRHNSSAQSDNGNFICMRLNNLSLARIGSIKNLLWVQMLDLSHNELISIEGLEAMQLLSCLNLSNNKIKSFTALEPLRHLKSLRALNISDNEIGKHSIDTTRYLCSSPLSHTVASDWKSNISCVEDAQLSKYWDAYLVFRDLSLTQLEVSGNAVDDEDLRSFLRKILPTLKWLDGRIHR*

Click here to download the sequence:
Link to NCBI Protein BLAST