Transcript Information: S_Transcript_104042.p1


Annotated TAIR IDAT3G61490.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:22758439-22760137 | Forward length=476
E-Value1.6E-250
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 119.204253638574
Replicate 219.719123267522
Replicate 316.112060644464
Condition 2: 8 Hour
Replicate 117.107181243414
Replicate 216.717425357158
Replicate 315.459845515701
Condition 3: 24 Hour
Replicate 129.48659181789
Replicate 225.735463694753
Replicate 326.053540374515


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_104042.p1 GENE.S_Transcript_104042~~S_Transcript_104042.p1 ORF type:5prime_partial len:546 (+),score=54.65,Glyco_hydro_28|PF00295.13|1.7e-35,Pectate_lyase_3|PF12708.3|9.7e-13,Pectate_lyase_3|PF12708.3|2.3e+02,Pectate_lyase_3|PF12708.3|1.7e+03 S_Transcript_104042:3-1640(+)
CCTCCCCACATTGTAAATTATAATTGTTCTGCCATTTGTGCCTCATCTGAAAAAAAAAAAAAAAAAAAATTGGACTTATATAGTAGCACTAGATCAATCTGTAAAGATACCATCAAATTATTCTTTTGCATTTATCAAACTCAAATTCCAATTCCCAATCCAACATTCTCAAAACTTAGCTTTTTATTTTTATTTTTTTTTCAATTCTCGTTCAAATTTTCTAAAATGTTTAAAGAGTTCTTAGTTTTGGTTTTTCTAGTATTAGTAATGAAAACAAAGGAATTAGAGGGAAGGAAATACAGAGTGTTAGATTATTTTGAGTACTCTGCCGTGAACTGCAGGGCTCACAGTGCTTCCATAACTGATTTTGGAGGCGTCGGTGATGGAATAACCTCCAATACAAAGGCGTTCCAGACAGCCGTTGATCATCTCAAGCAGTTTGAATCGGATGGTGGATCTTTGCTCTTTGTTCCTCCTGGGAAATGGTTAACAGGGAGCTTCAATCTCACTAGCCATTTTACTCTTTATCTTCACAAGGATGCTTTTCTCTTGGCTGCCCAGGACATAAACGAATGGCCGGTGATCGAGCCCCTTCCTTCGTATGGCCGAGGAAGGGATGCTCCGGGTGGAAGATACTCAAGTCTAATCTTTGGTACTAACCTCACAGATGTCATAATCACAGGGGCCAATGGCACTATTGATGGACAAGGAGAACTATGGTGGCAAAAGTTCCACAAGGGCGAGCTTAAGTACACGAGGCCTTACCTAATTGAGCTTATTTATTCCGATGGCATCCAAATCTCGAACCTCACATTGATCAACTCTCCTTCATGGAATGTTCATCCCATTTACAGCAGCAATATTCTAGTTCAAGGTATCACTATCACTGCACCTGTGAACTCTCCGAACACTGATGGGATAAACCCAGATTCCTGCACAAACACAAGAATTGAGGACTGCTATATCGTGTCAGGGGACGACTGTGTTGCTGTCAAAAGTGGGTGGGATGAGTATGGCATCGCCTTCGGGATGCCCACCAAGCAGCTAGTTATCCGACGTCTGACATGCATTTCTCCAACAAGTGCTGTAATCGCTTTGGGAAGTGAGATGTCAGGTGGTATCCAAGATGTTAGGGCAGAGGACATTTTGGCAATCAACTCTGAATCAGGAGTCAGGATCAAAACTGGAGCAGGCAGGGGAGGTTTTGTGAAGGACATATATGTGAAAGGAATGACAATGCATACAATGAAATGGGCTTTTTGGATGACAGGGAATTATGGGTCACATCCTGACGACAAGTATGATCCTAATGCTCTTCCTACCATACAGAACATTAACTACAGAGATATGGTAGCTGAGGATGTGATGATGGCAGCTCGGTTAGAAGGAATTTCTGGGGATCCATTCACTGAAATCTGCATATCAAATGTGACTATTTCAATGGCTGCCAAACCTAAGAAAATTCAGTGGGCTTGCACTGATGTCGCCGGGATTTCAAGCCAGGTTACCCCTAGCCCTTGCAATTTGTTGGCTGATCAAGGGCCAGAGCACGCGACAATATGTCAGTTCCCCACAGTACCCCTGCCAATCGAAAATATACAAATCCAAACATGTTCTTACAACAGAAGGTATCTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_104042.p1 GENE.S_Transcript_104042~~S_Transcript_104042.p1 ORF type:5prime_partial len:546 (+),score=54.65,Glyco_hydro_28|PF00295.13|1.7e-35,Pectate_lyase_3|PF12708.3|9.7e-13,Pectate_lyase_3|PF12708.3|2.3e+02,Pectate_lyase_3|PF12708.3|1.7e+03 S_Transcript_104042:3-1640(+)
PPHIVNYNCSAICASSEKKKKKKLDLYSSTRSICKDTIKLFFCIYQTQIPIPNPTFSKLSFLFLFFFQFSFKFSKMFKEFLVLVFLVLVMKTKELEGRKYRVLDYFEYSAVNCRAHSASITDFGGVGDGITSNTKAFQTAVDHLKQFESDGGSLLFVPPGKWLTGSFNLTSHFTLYLHKDAFLLAAQDINEWPVIEPLPSYGRGRDAPGGRYSSLIFGTNLTDVIITGANGTIDGQGELWWQKFHKGELKYTRPYLIELIYSDGIQISNLTLINSPSWNVHPIYSSNILVQGITITAPVNSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAFGMPTKQLVIRRLTCISPTSAVIALGSEMSGGIQDVRAEDILAINSESGVRIKTGAGRGGFVKDIYVKGMTMHTMKWAFWMTGNYGSHPDDKYDPNALPTIQNINYRDMVAEDVMMAARLEGISGDPFTEICISNVTISMAAKPKKIQWACTDVAGISSQVTPSPCNLLADQGPEHATICQFPTVPLPIENIQIQTCSYNRRYL*

Click here to download the sequence:
Link to NCBI Protein BLAST