Transcript Information: S_Transcript_10548.p1


Annotated TAIR IDAT1G60900.1
Annotated Gene NameU2 snRNP auxilliary factor, large subunit, splicing factor
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:22424008-22427806 | Forward length=589
E-Value3.6E-160
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 125.776114403886
Replicate 222.756587971273
Replicate 321.110553252926
Condition 2: 8 Hour
Replicate 128.567975707857
Replicate 232.713552256204
Replicate 328.15300627073
Condition 3: 24 Hour
Replicate 125.897865018723
Replicate 227.153811982982
Replicate 327.442853346447


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_10548.p1 GENE.S_Transcript_10548~~S_Transcript_10548.p1 ORF type:complete len:318 (+),score=79.83,RRM_1|PF00076.18|0.00027,RRM_1|PF00076.18|2.9e-16,RRM_1|PF00076.18|6.5e-05,RRM_6|PF14259.2|0.002,RRM_6|PF14259.2|9.7e-05,RRM_6|PF14259.2|0.76,RRM_5|PF13893.2|0.00022,RRM_5|PF13893.2|4.4,RRM_5|PF13893.2|0.0075 S_Transcript_10548:140-955(+)
ATGGCACTAGATGGTATCATATTTGAGGGAACACCTGTTAAGGTGAGAAGACCCAGCGACTACAACCCATCACTGGCTGCAGCACTTGGTCCAAGTCAACCTAATCCCAACTTGAACTTGGCTGCTGTTGGATTGACGCCAGGGTCTGCAGGTGGTCTTGAGGGTCCTGACAGAATATTTGTGGGCGGGCTTCCTTACTACTTTACTGAGGCTCAGGTCCGAGAGTTGTTAGAATCTTTTGGAGCTCTTCGGGGCTTTGACCTTGTCAAGGACAGAGAAACTGGGAACTCAAAAGGCTATGCGTTTTGTGTTTACCAAGATCTATCTGTGACAGACATTGTTTGTCAAGCACTTAATGGAATCAAAATGGGGGATAAAACCCTTACTGTTAGGCGTGCAAACCAGGGTGCCCAACAACCCAAGCCGGAGCAAGAGCATGTATATATGCATGCTCAGCAGCAGATAGCACTGCAGAAAATGATATTGCAACCCGGTGGTCTTCCGACCAAAGTTGTGTGCTTAACCAACTGTGTGAATCCTGATGAACTGAGTGATGATCAGGAGTTTGAAGATATATTGGATGACATGAGACAAGAGGGAGAAAAATTTGGCTCTTTGGTAAATATTGCCATACCACGCCCACAATCAAATGGAGAGCCATCTCCCGGGCTTGGGAAGGTGTTCTTGGAATATGGTGATGTGGAGAGTGCGTCAAGGGCCAGAGCTGGAATGAACGGAAGAAAGTTTGGCGGCAACCAAGTTGTGGCTATATATTACCCGGAAAATAAATTTGCGGAGGGTCAGTATGATGGCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_10548.p1 GENE.S_Transcript_10548~~S_Transcript_10548.p1 ORF type:complete len:318 (+),score=79.83,RRM_1|PF00076.18|0.00027,RRM_1|PF00076.18|2.9e-16,RRM_1|PF00076.18|6.5e-05,RRM_6|PF14259.2|0.002,RRM_6|PF14259.2|9.7e-05,RRM_6|PF14259.2|0.76,RRM_5|PF13893.2|0.00022,RRM_5|PF13893.2|4.4,RRM_5|PF13893.2|0.0075 S_Transcript_10548:140-955(+)
MALDGIIFEGTPVKVRRPSDYNPSLAAALGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGALRGFDLVKDRETGNSKGYAFCVYQDLSVTDIVCQALNGIKMGDKTLTVRRANQGAQQPKPEQEHVYMHAQQQIALQKMILQPGGLPTKVVCLTNCVNPDELSDDQEFEDILDDMRQEGEKFGSLVNIAIPRPQSNGEPSPGLGKVFLEYGDVESASRARAGMNGRKFGGNQVVAIYYPENKFAEGQYDG*

Click here to download the sequence:
Link to NCBI Protein BLAST