Transcript Information: S_Transcript_105872.p1


Annotated TAIR IDAT5G50280.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)EMB1006
Annotation TypeOrtholog
Chromosome Positionchr5:20459238-20461504 | Forward length=723
E-Value1E-296
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.8836942701497
Replicate 25.297653715128
Replicate 37.3716939250702
Condition 2: 8 Hour
Replicate 19.5542744319805
Replicate 210.514441307983
Replicate 38.7385612436234
Condition 3: 24 Hour
Replicate 15.6931028716336
Replicate 24.1478425286141
Replicate 34.7637536284919


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_105872.p1 GENE.S_Transcript_105872~~S_Transcript_105872.p1 ORF type:5prime_partial len:683 (+),score=174.22,PPR_2|PF13041.2|1.7e+02,PPR_2|PF13041.2|1.2e-10,PPR_2|PF13041.2|0.066,PPR_2|PF13041.2|0.036,PPR_2|PF13041.2|2.8e-15,PPR_2|PF13041.2|4.6e-11,PPR_2|PF13041.2|1.3e-09,PPR_2|PF13041.2|1.4e-10,PPR_2|PF13041.2|2.7e-10,PPR_2|PF13041.2|2.5e-06,PPR|PF01535.16|1.5e+03,PPR|PF01535.16|1.7e+03,PPR|PF01535.16|0.055,PPR|PF01535.16|18,PPR|PF01535.16|63,PPR|PF01535.16|1.1e-08,PPR|PF01535.16|0.00045,PPR|PF01535.16|0.072,PPR|PF01535.16|2.1e-06,PPR|PF01535.16|0.063,PPR|PF01535.16|0.0003,PPR|PF01535.16|0.25,PPR|PF01535.16|0.00065,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|34,PPR_3|PF13812.2|2.3e+02,PPR_3|PF13812.2|1.5e-06,PPR_3|PF13812.2|0.00059,PPR_3|PF13812.2|0.00072,PPR_3|PF13812.2|0.0035,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|0.082,PPR_3|PF13812.2|4.1,PPR_3|PF13812.2|0.013,PPR_1|PF12854.3|1.7e+03,PPR_1|PF12854.3|34,PPR_1|PF12854.3|2.1e+02,PPR_1|PF12854.3|15,PPR_1|PF12854.3|3.1e-10,PPR_1|PF12854.3|1.5,PPR_1|PF12854.3|0.014,PPR_1|PF12854.3|0.0073,PPR_1|PF12854.3|0.91,PPR_1|PF12854.3|0.009,PPR_1|PF12854.3|0.00025,PPR_1|PF12854.3|0.057 S_Transcript_105872:1-2049(+)
GTTTCTTTGGAACATAGAAATTACTACTACTACTACAGATGTTCTTCTTCTACTCCCTCCATTTTCCTCCCTTTCCTTGAAGACCAAAATGATGATGATGGTGATAATGAGGAAAATGATGAAGAAAGTGAGCAAGAGGAGTTCTTATATGAGGACCCACTTTACAGGTTCTTCAAAACCCGGACTTCAACCCAAGAACAAGATCCACCACAAGAGTCCAAACTATCCCTTCAAAGAAACAGAAAAACTTCTTGGCATTTGGCTTCTGACCCTGATATATTCAAGCAAAATGAGGGTGAAGAAATCCAGTTTGAGCTCAAGGGAGATGAAATGGAGGAAAATGGTGATCTGGGTTTTGATGGGGCCCCCAAAATTGAGGGTGTTGTAGGGGAAATTCTGGGTCTTGCGAGGGACTTGCCCGAGAACTCGACTTTGGGGGAGCATTTGGGGAAGTATGAAGGAGGGAAAGTAGGGGAGAAAGAGTGTGCGGAGGTGTTGGGTTTGTTGTGTAAGGAAGGATTGATGATGAGTTGTTTGTATTTTTATGAATGGATGGCATTGCAAGAGCCCACCTCACTTGTTACTCCTAGGGCTTGTTCTGTGCTTTTTCCTGCCTTGGGGAAGGCTGGTATGGGTGATAAGCTTATGATTTTGTGGAGGAATTTGCCCCTTAATAGTAGGGATTTCAGGGATGTGCATGTTTATAATGCTGCTTTGTCTGGTTTGCTTTCCAGTGAGAGGTATGAGGATGCTTGGAAGGTGTATGAGACAATGGAGATGAATAATATCTTGCCAGATCGTGTGACAGGTTCTGTTATGATTACTATCATGCGGAAGGAAGGGAGGAGTGCCAAAGATGCGTGGGAGTTTTTTGAGCGAATGAATAGAAAAGGAGTCAAATGGAGTTTGGAGATAATAGGAGCTCTGATCAAATCTTTTTGTGATGAGGGACTCCAGAAGCAAGCCCTTATTATTCAAGCAGAGATGGAGAAGAGAGGGATATCCTCAAATGCTATAATATATAACACTCTTATGGATGCCTATTGTAAGTCCAACCATCTTGAAGAAGCTGAAGCTCTCTTTACAGAGATGAAAGACAAAAAGCTTTTGCCTACTTGTGCCACCTACAACATTTTTCTTGATGCATACAGCAAAAGGATGCAGCCAGAGATTGTTGAAAAACTTCTCCAAGAAATGCAAAATGCTGGCCTGGAACCAAATGTCAAATCATACACAAGCCTAATAAGTGCATATGGGAGGCAGAAGAACATGAGTGATATGGCTGCTGATGCATTTTTGAGGATGAAGAAGGCTGGTATAAAACCAACTTCGCATTCATATACTGCTCTAATCCATGCGTATTCAGTAAGTGGATGGCATGAGAAAGCCTACAAAGCATTTGAGAACATGCAGAGGGAAGGAATTAAACCATCTATAGAAACATATACTGCTTTGCTTGATGCATTTAGGCGGGCTGGGGATGCCCAAACACTAATGGCTATATGGAAGTCCATGATTCGTGAGAAAGTTGGAGGAACTCGGGTTACTTTCAACATTCTCCTCGATGGGTTTGCAAAGCAAGGCCAGTATGTGGAAGCAAGAGATGTGATATGTGAATTTGGGAAGATTGGCTTCCAACCAACAGTGATGACCTATAATATGCTAATAAATGCATATGCAAGAGGAGGACAACACCTTAAGTTACCACAGTTAAGGGATATGGCAGCTCTGAATTTAAAACCTGATTCAATCACATATTCTACAATGATTTACGCATTTGTCCGTGTTCGGGATTACAAAAGGGCATTTTTTTACCACAAGCAAATGGTGAAGAGTGGGCAAGTTCCAGACGTTAAATCCTATCAGAAACTGAGAGCAATCTTGGATTTAAAAGCTGCCATAAAGAACAAGAAGGACAAGAATGCCATACTTGGTATAGTTAGTAGCAAACTGGGTATGTTGAAGGCTAAAAAGAAAAGTAAGAAAGATGAGTTCTGGAAGAACAAGAAGAAAAACAGAAGAACAAATGGCTCTCCTCAGGTTAGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_105872.p1 GENE.S_Transcript_105872~~S_Transcript_105872.p1 ORF type:5prime_partial len:683 (+),score=174.22,PPR_2|PF13041.2|1.7e+02,PPR_2|PF13041.2|1.2e-10,PPR_2|PF13041.2|0.066,PPR_2|PF13041.2|0.036,PPR_2|PF13041.2|2.8e-15,PPR_2|PF13041.2|4.6e-11,PPR_2|PF13041.2|1.3e-09,PPR_2|PF13041.2|1.4e-10,PPR_2|PF13041.2|2.7e-10,PPR_2|PF13041.2|2.5e-06,PPR|PF01535.16|1.5e+03,PPR|PF01535.16|1.7e+03,PPR|PF01535.16|0.055,PPR|PF01535.16|18,PPR|PF01535.16|63,PPR|PF01535.16|1.1e-08,PPR|PF01535.16|0.00045,PPR|PF01535.16|0.072,PPR|PF01535.16|2.1e-06,PPR|PF01535.16|0.063,PPR|PF01535.16|0.0003,PPR|PF01535.16|0.25,PPR|PF01535.16|0.00065,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|34,PPR_3|PF13812.2|2.3e+02,PPR_3|PF13812.2|1.5e-06,PPR_3|PF13812.2|0.00059,PPR_3|PF13812.2|0.00072,PPR_3|PF13812.2|0.0035,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|0.082,PPR_3|PF13812.2|4.1,PPR_3|PF13812.2|0.013,PPR_1|PF12854.3|1.7e+03,PPR_1|PF12854.3|34,PPR_1|PF12854.3|2.1e+02,PPR_1|PF12854.3|15,PPR_1|PF12854.3|3.1e-10,PPR_1|PF12854.3|1.5,PPR_1|PF12854.3|0.014,PPR_1|PF12854.3|0.0073,PPR_1|PF12854.3|0.91,PPR_1|PF12854.3|0.009,PPR_1|PF12854.3|0.00025,PPR_1|PF12854.3|0.057 S_Transcript_105872:1-2049(+)
VSLEHRNYYYYYRCSSSTPSIFLPFLEDQNDDDGDNEENDEESEQEEFLYEDPLYRFFKTRTSTQEQDPPQESKLSLQRNRKTSWHLASDPDIFKQNEGEEIQFELKGDEMEENGDLGFDGAPKIEGVVGEILGLARDLPENSTLGEHLGKYEGGKVGEKECAEVLGLLCKEGLMMSCLYFYEWMALQEPTSLVTPRACSVLFPALGKAGMGDKLMILWRNLPLNSRDFRDVHVYNAALSGLLSSERYEDAWKVYETMEMNNILPDRVTGSVMITIMRKEGRSAKDAWEFFERMNRKGVKWSLEIIGALIKSFCDEGLQKQALIIQAEMEKRGISSNAIIYNTLMDAYCKSNHLEEAEALFTEMKDKKLLPTCATYNIFLDAYSKRMQPEIVEKLLQEMQNAGLEPNVKSYTSLISAYGRQKNMSDMAADAFLRMKKAGIKPTSHSYTALIHAYSVSGWHEKAYKAFENMQREGIKPSIETYTALLDAFRRAGDAQTLMAIWKSMIREKVGGTRVTFNILLDGFAKQGQYVEARDVICEFGKIGFQPTVMTYNMLINAYARGGQHLKLPQLRDMAALNLKPDSITYSTMIYAFVRVRDYKRAFFYHKQMVKSGQVPDVKSYQKLRAILDLKAAIKNKKDKNAILGIVSSKLGMLKAKKKSKKDEFWKNKKKNRRTNGSPQVS*

Click here to download the sequence:
Link to NCBI Protein BLAST