Transcript Information: S_Transcript_105891.p1


Annotated TAIR IDAT5G61400.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:24681550-24683514 | Forward length=654
E-Value1.1E-173
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.1570870102252
Replicate 21.9846587308109
Replicate 31.5207653442249
Condition 2: 8 Hour
Replicate 12.2060748603931
Replicate 22.7839032040439
Replicate 32.9401169110319
Condition 3: 24 Hour
Replicate 12.1288117344657
Replicate 22.0387236800313
Replicate 32.0041504549792


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_105891.p1 GENE.S_Transcript_105891~~S_Transcript_105891.p1 ORF type:complete len:667 (+),score=93.23,PPR_2|PF13041.2|3.2e+03,PPR_2|PF13041.2|1.6e+02,PPR_2|PF13041.2|5.8e-12,PPR_2|PF13041.2|6.1e-10,PPR_2|PF13041.2|7.6e-15,PPR_2|PF13041.2|1.1e-15,PPR_2|PF13041.2|6.8e-17,PPR_2|PF13041.2|1.6e-15,PPR_2|PF13041.2|0.0048,PPR_2|PF13041.2|2.2e-17,PPR_2|PF13041.2|1.2e-12,PPR_2|PF13041.2|7.2e-14,PPR_2|PF13041.2|0.00024,PPR_2|PF13041.2|6.5e-10,PPR_2|PF13041.2|0.2,PPR_1|PF12854.3|10,PPR_1|PF12854.3|3e+03,PPR_1|PF12854.3|7.6e-10,PPR_1|PF12854.3|8e-08,PPR_1|PF12854.3|7.5e-09,PPR_1|PF12854.3|5.7e-11,PPR_1|PF12854.3|9.5e-11,PPR_1|PF12854.3|3.6e-07,PPR_1|PF12854.3|1.6e-10,PPR_1|PF12854.3|6.4e-07,PPR_1|PF12854.3|5.9e-07,PPR_1|PF12854.3|6.8e-06,PPR_1|PF12854.3|2.9e-09,PPR_1|PF12854.3|3e+03,PPR_1|PF12854.3|2.3e+03,PPR|PF01535.16|1.9e+03,PPR|PF01535.16|1e+02,PPR|PF01535.16|0.44,PPR|PF01535.16|1.1,PPR|PF01535.16|1.9e-06,PPR|PF01535.16|0.00039,PPR|PF01535.16|5.4e-07,PPR|PF01535.16|7.1e-05,PPR|PF01535.16|9.3e-07,PPR|PF01535.16|8.4e-06,PPR|PF01535.16|7.8e-10,PPR|PF01535.16|1.7e-06,PPR|PF01535.16|0.0015,PPR|PF01535.16|0.0011,PPR|PF01535.16|3.8e-07,PPR|PF01535.16|2.8e+03,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|2e+02,PPR_3|PF13812.2|0.0025,PPR_3|PF13812.2|0.19,PPR_3|PF13812.2|0.018,PPR_3|PF13812.2|0.00011,PPR_3|PF13812.2|0.00043,PPR_3|PF13812.2|0.00096,PPR_3|PF13812.2|3.9e-07,PPR_3|PF13812.2|0.06,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|37,PPR_3|PF13812.2|0.0092,PPR_3|PF13812.2|6.4e+02,MRP-S27|PF10037.5|40,MRP-S27|PF10037.5|2.5e+02,MRP-S27|PF10037.5|24,MRP-S27|PF10037.5|0.004,MRP-S27|PF10037.5|0.11 S_Transcript_105891:418-2418(+)
ATGTTTGAGCAAAGAATGTTGAAGCTTTTTCACCCAGCAAAGAAAAGGCTCTACTTTTTCAAGAGACCCTTATCATGTTGTTTAAGTAATATCCATTATTATTATTACTATTCTTCATCAACAATGGATTATATGTCTAAGCTTACAAGCACTATACTTGATAGCAAAAACCCTAAAGAAGCACTGGACTATTTTGAGTCAGTTTCACCTAGGATTAACATTACGAAAAATCGTCGCCCCCATTCGGCGATTATTCATGTGTTGGTCAATGCCAAATGTTATTTGGAAGCAAGGTCTTTGTTAAAAGGCCTCATCCAGGACCTTTTAAAGACCTGCTCACCACCCCGTGTGTGTTCTTTACTTTACAAGGACTTGAATCGAGTAAATGTGTCGAAATTTAGCAACAATGTGTTTGGGACTTTGATAGTTGCATTATCCGAAATGGGTCTTGTGGATGAAGCCATCTGGGTTTATCGAAAGATTGGTGGTTTGCCTGCTATGCAGGCTTGTAATGCACTTTTGAATGGGTTGATTAAGGTAGGCAGGATTGGTTCCATGTGGGATTTTTATAATGGTATGGTTGCTCAAGGAATGGTGCCTAATGTGTTCACGTATGGAGTACTAATTGACGCCTGTTGTGAGGAGGGGGACATTGAGAAAGCCGGGAAGTTGTTCACTGAAATGGTTGGGAATAAGATTGAGCCATCAGTTGTTATCTTGACGACAATTATTCGTGGTTTTTGCAATGAGAATAGGTTGTCAGAAGCAGAAGATTTGTTGAGTGTGATGAAAGAGTTTGACCTAGCTCCCAATTTATACACGTACAACATTTTGATGAGTGGACACTGTAAAATGGGCAACCTACCATGTGCTCTGGGGTTGTATAGGGAAATGCTAAGCATTAACTTGAAGCCTAATGTTGTAACATTTGGAATCTTAATTGATGCTCTTTGTAAAGATGGTGAAGTGGATACAGCAAGGAACCTATTTCCTCATATGGTGAAGGGTGGTGTTCCTCCCAATGTTTATGTATATAATAGTTTGATTGATGGGCTCTGTAGGGCCAGAGATCTTTCTGGAGCTCTGGCTCTGCTTGTGGAGATGGAAAAATTGAACATCAGATCCGATGTGTTTACTTATAGTATACTTATAAAGGGTCTATCTGACGTCGGGAGAGTGAAAGAAGCATCTAATCTACTTTCAAAGATGAAAAATAAGGGCATCATTGCAAATGCTGTGGCGTACAACTCGCTTATAAATGGACACTGCAAACATGGAAACATGGAAAAAGCTCTGGAGTTGTGTTCACAAATGATGCAAGAGGGCATACAACCAAATGTCGTGACCTTCTCTTCCCTCATACATGGTTATAGTCAAGCCAGGGATATGGAGGCTGCAATGGGAATGTATATAGAAATGATAATCAAAGGTGTTCCACCTGATGTTGTCACCTACACAGATTTACTGGACGGGCATTTCAAAAATGCAGATACAAAGGCTGCTCTTCAGATATACAGAGAAATGCAAGACGCTGGATTCATCCCTAATGCTTTCACCATCAGTTGTGTAATTGATGGACTGTGCAAAGATGGATATCTAAATAAAGCCCTCAAGATATTCCTGGAATTGACTAGTTGTGAACATTTTGAAGATTCTCAGAATCAGTTTGACGCTAATAGAGTTCCTGTAAATCATGTTGCATATACAGCCCTTATACATGGTCTGTGCAAAGAAGGAAGAATGCGTACAGCCAGTAAGTTTTTCTCAGATATGAGAGCGCATGGTATTAGAGCTGATAGAATCATCTACATGATCATTATACTGGGGCATTCCCGAGCACAGCATCTGCGCAATTTACTGATGCTGCAGGCAGATATGGTCAAGTTAGGTTTCTTGCCAGACACTACCATATATTCATTCTTATGTAAGGCTTACCTAAACATTGGGGATGAGAAAGTAGCTCTTCGGCCTTTGGCCAATTTAGGGACGAGTTCATTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_105891.p1 GENE.S_Transcript_105891~~S_Transcript_105891.p1 ORF type:complete len:667 (+),score=93.23,PPR_2|PF13041.2|3.2e+03,PPR_2|PF13041.2|1.6e+02,PPR_2|PF13041.2|5.8e-12,PPR_2|PF13041.2|6.1e-10,PPR_2|PF13041.2|7.6e-15,PPR_2|PF13041.2|1.1e-15,PPR_2|PF13041.2|6.8e-17,PPR_2|PF13041.2|1.6e-15,PPR_2|PF13041.2|0.0048,PPR_2|PF13041.2|2.2e-17,PPR_2|PF13041.2|1.2e-12,PPR_2|PF13041.2|7.2e-14,PPR_2|PF13041.2|0.00024,PPR_2|PF13041.2|6.5e-10,PPR_2|PF13041.2|0.2,PPR_1|PF12854.3|10,PPR_1|PF12854.3|3e+03,PPR_1|PF12854.3|7.6e-10,PPR_1|PF12854.3|8e-08,PPR_1|PF12854.3|7.5e-09,PPR_1|PF12854.3|5.7e-11,PPR_1|PF12854.3|9.5e-11,PPR_1|PF12854.3|3.6e-07,PPR_1|PF12854.3|1.6e-10,PPR_1|PF12854.3|6.4e-07,PPR_1|PF12854.3|5.9e-07,PPR_1|PF12854.3|6.8e-06,PPR_1|PF12854.3|2.9e-09,PPR_1|PF12854.3|3e+03,PPR_1|PF12854.3|2.3e+03,PPR|PF01535.16|1.9e+03,PPR|PF01535.16|1e+02,PPR|PF01535.16|0.44,PPR|PF01535.16|1.1,PPR|PF01535.16|1.9e-06,PPR|PF01535.16|0.00039,PPR|PF01535.16|5.4e-07,PPR|PF01535.16|7.1e-05,PPR|PF01535.16|9.3e-07,PPR|PF01535.16|8.4e-06,PPR|PF01535.16|7.8e-10,PPR|PF01535.16|1.7e-06,PPR|PF01535.16|0.0015,PPR|PF01535.16|0.0011,PPR|PF01535.16|3.8e-07,PPR|PF01535.16|2.8e+03,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|2e+02,PPR_3|PF13812.2|0.0025,PPR_3|PF13812.2|0.19,PPR_3|PF13812.2|0.018,PPR_3|PF13812.2|0.00011,PPR_3|PF13812.2|0.00043,PPR_3|PF13812.2|0.00096,PPR_3|PF13812.2|3.9e-07,PPR_3|PF13812.2|0.06,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|37,PPR_3|PF13812.2|0.0092,PPR_3|PF13812.2|6.4e+02,MRP-S27|PF10037.5|40,MRP-S27|PF10037.5|2.5e+02,MRP-S27|PF10037.5|24,MRP-S27|PF10037.5|0.004,MRP-S27|PF10037.5|0.11 S_Transcript_105891:418-2418(+)
MFEQRMLKLFHPAKKRLYFFKRPLSCCLSNIHYYYYYSSSTMDYMSKLTSTILDSKNPKEALDYFESVSPRINITKNRRPHSAIIHVLVNAKCYLEARSLLKGLIQDLLKTCSPPRVCSLLYKDLNRVNVSKFSNNVFGTLIVALSEMGLVDEAIWVYRKIGGLPAMQACNALLNGLIKVGRIGSMWDFYNGMVAQGMVPNVFTYGVLIDACCEEGDIEKAGKLFTEMVGNKIEPSVVILTTIIRGFCNENRLSEAEDLLSVMKEFDLAPNLYTYNILMSGHCKMGNLPCALGLYREMLSINLKPNVVTFGILIDALCKDGEVDTARNLFPHMVKGGVPPNVYVYNSLIDGLCRARDLSGALALLVEMEKLNIRSDVFTYSILIKGLSDVGRVKEASNLLSKMKNKGIIANAVAYNSLINGHCKHGNMEKALELCSQMMQEGIQPNVVTFSSLIHGYSQARDMEAAMGMYIEMIIKGVPPDVVTYTDLLDGHFKNADTKAALQIYREMQDAGFIPNAFTISCVIDGLCKDGYLNKALKIFLELTSCEHFEDSQNQFDANRVPVNHVAYTALIHGLCKEGRMRTASKFFSDMRAHGIRADRIIYMIIILGHSRAQHLRNLLMLQADMVKLGFLPDTTIYSFLCKAYLNIGDEKVALRPLANLGTSSF*

Click here to download the sequence:
Link to NCBI Protein BLAST