Transcript Information: S_Transcript_106314.p1


Annotated TAIR IDAT5G08580.1
Annotated Gene NameCalcium-binding EF hand family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:2780976-2782961 | Reverse length=391
E-Value6.2E-193
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.5319814816549
Replicate 26.0880810807293
Replicate 35.4806244022021
Condition 2: 8 Hour
Replicate 18.6005701514852
Replicate 27.756277712358
Replicate 38.9486341360535
Condition 3: 24 Hour
Replicate 13.8125504205282
Replicate 23.9554765487021
Replicate 33.9855589036386


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_106314.p1 GENE.S_Transcript_106314~~S_Transcript_106314.p1 ORF type:complete len:424 (+),score=67.61,EF-hand_1|PF00036.28|2.8e+02,EF-hand_1|PF00036.28|0.076,EF-hand_1|PF00036.28|0.13,EF-hand_1|PF00036.28|0.00047,EF-hand_1|PF00036.28|0.075,EF-hand_1|PF00036.28|0.009,EF-hand_5|PF13202.2|3.8e+02,EF-hand_5|PF13202.2|0.097,EF-hand_5|PF13202.2|0.11,EF-hand_5|PF13202.2|0.039,EF-hand_5|PF13202.2|0.02,EF-hand_5|PF13202.2|0.0076,EF-hand_7|PF13499.2|0.26,EF-hand_7|PF13499.2|0.00028,EF-hand_7|PF13499.2|8.8e-09,EF-hand_6|PF13405.2|5.5e+02,EF-hand_6|PF13405.2|2.4,EF-hand_6|PF13405.2|0.14,EF-hand_6|PF13405.2|0.31,EF-hand_6|PF13405.2|0.021,EF-hand_6|PF13405.2|5.2,EF-hand_8|PF13833.2|87,EF-hand_8|PF13833.2|1.9,EF-hand_8|PF13833.2|0.0062,EF-hand_8|PF13833.2|5.7,EF-hand_8|PF13833.2|4.5e-05,SPARC_Ca_bdg|PF10591.5|0.27,SPARC_Ca_bdg|PF10591.5|31,SPARC_Ca_bdg|PF10591.5|0.00031 S_Transcript_106314:783-2054(+)
ATGGGTAAGGTGTCAGTGATTCTATACATAACAATAGGCATAGGATTACTCTTTTTCCTCTCCCAATCTCCACGTCAGCACCACCCAAATGACAACCACACCTCCGACCGCCACGTACGCCATCACGGTCACGGCCGTGGTGGGGGGCACCGCCGTCTAAAACTCCGGTCTAACTTCACATTCACCCCATCAGACCACCTCGAACACCACGACCCTCGCCACGACTTTCGCCACGGCCACTTCCACGAGCCCGTGGCCTTCGATCCCGTCGTCGCCGAGATGGAGCGCCACCGCGAGGACAAGCAGTGGGAGCGCATGTACTTCGATGAACACCACCACAAAGATTTCTCAGACATTGCCAGGCAACAAGACCACCATAGAAATAATCATCATCATGAAGGGGTTGGTGGTGATGATCATGCGCCGGGGCACGAGCACCAGCCGGAATGGGAGGACTTTATGGATGCTGAAGATTACCTGAATGATGAAGAGCGGTTCAATGTTACTAATAGGCTATTGCTTTTGTTCCCCAAGATTGATGTGGACCCCATTGATGGGTTTGTCTCAGAAAAGGAGCTCACTCATTGGCATCTTGAACAAGCTCTCAAGGAGGTCATGCATCGTACTCAGAGAGAGATGGAGGTTCATGATAAGAACCGTGATGGGTTTGTTTCTTTCACTGAGTATGAGCCCCCCAGCTGGGTCAAGAGCTCAGATAATAACACATTTGGGTATGATATGGGCTGGTGGAAAGAAGAACACTTTAATGTTTCTGATCTGAATGGAGATGGTCTTCTAAACATAACGGAGTTCAATGACTTTCTGCACCCTGCTGATACCGAAAATCCAAAGTTACTTCAGTGGCTGTGCAAGGAGGAAATCAGGGAAAGAGACACTGATAAAGATGGCAAGGTCGACTTCAACGAATTTTTCCATGGGGTTTTCGATCTGGTGAAAAATTATGATGAGGATGCACACAATTTTACGCATCCTTCGGATGATGATACACCTGCCGCTAGGAAGTTGTTTAATCAGCTCGATGGAGATGGTGATGGTCTTTTGACAGACACGGAGTTGTTACCTATTATTGGTAAACTTCATCCCTCCGAGCACCACTACGCCAAACAACAGGCAGATTATATCATATCACAGGCTGATGCAGATAAAGATGGACGCCTTTCCCTGGATGAGATGATCGAGAATCCTTATGTATTCTATAGTACTATTTTCAGTGATGAAGATGACTATGACTACCACGACGAGCTTCGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_106314.p1 GENE.S_Transcript_106314~~S_Transcript_106314.p1 ORF type:complete len:424 (+),score=67.61,EF-hand_1|PF00036.28|2.8e+02,EF-hand_1|PF00036.28|0.076,EF-hand_1|PF00036.28|0.13,EF-hand_1|PF00036.28|0.00047,EF-hand_1|PF00036.28|0.075,EF-hand_1|PF00036.28|0.009,EF-hand_5|PF13202.2|3.8e+02,EF-hand_5|PF13202.2|0.097,EF-hand_5|PF13202.2|0.11,EF-hand_5|PF13202.2|0.039,EF-hand_5|PF13202.2|0.02,EF-hand_5|PF13202.2|0.0076,EF-hand_7|PF13499.2|0.26,EF-hand_7|PF13499.2|0.00028,EF-hand_7|PF13499.2|8.8e-09,EF-hand_6|PF13405.2|5.5e+02,EF-hand_6|PF13405.2|2.4,EF-hand_6|PF13405.2|0.14,EF-hand_6|PF13405.2|0.31,EF-hand_6|PF13405.2|0.021,EF-hand_6|PF13405.2|5.2,EF-hand_8|PF13833.2|87,EF-hand_8|PF13833.2|1.9,EF-hand_8|PF13833.2|0.0062,EF-hand_8|PF13833.2|5.7,EF-hand_8|PF13833.2|4.5e-05,SPARC_Ca_bdg|PF10591.5|0.27,SPARC_Ca_bdg|PF10591.5|31,SPARC_Ca_bdg|PF10591.5|0.00031 S_Transcript_106314:783-2054(+)
MGKVSVILYITIGIGLLFFLSQSPRQHHPNDNHTSDRHVRHHGHGRGGGHRRLKLRSNFTFTPSDHLEHHDPRHDFRHGHFHEPVAFDPVVAEMERHREDKQWERMYFDEHHHKDFSDIARQQDHHRNNHHHEGVGGDDHAPGHEHQPEWEDFMDAEDYLNDEERFNVTNRLLLLFPKIDVDPIDGFVSEKELTHWHLEQALKEVMHRTQREMEVHDKNRDGFVSFTEYEPPSWVKSSDNNTFGYDMGWWKEEHFNVSDLNGDGLLNITEFNDFLHPADTENPKLLQWLCKEEIRERDTDKDGKVDFNEFFHGVFDLVKNYDEDAHNFTHPSDDDTPAARKLFNQLDGDGDGLLTDTELLPIIGKLHPSEHHYAKQQADYIISQADADKDGRLSLDEMIENPYVFYSTIFSDEDDYDYHDELR*

Click here to download the sequence:
Link to NCBI Protein BLAST