Transcript Information: S_Transcript_107641.p1


Annotated TAIR IDAT3G49142.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:18215788-18217848 | Reverse length=686
E-Value7.1e-312
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.8394280265492
Replicate 21.7195997743357
Replicate 32.4680720347171
Condition 2: 8 Hour
Replicate 14.2650780634266
Replicate 25.1981648309953
Replicate 34.670678372268
Condition 3: 24 Hour
Replicate 12.3451124923726
Replicate 22.0997354842792
Replicate 32.5592956822838


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_107641.p1 GENE.S_Transcript_107641~~S_Transcript_107641.p1 ORF type:complete len:680 (+),score=130.34,PPR_2|PF13041.2|3.3e+03,PPR_2|PF13041.2|5.4e-09,PPR_2|PF13041.2|1.3e+03,PPR_2|PF13041.2|1e-07,PPR_2|PF13041.2|1.5e-07,PPR_2|PF13041.2|0.064,PPR_2|PF13041.2|3.3e-07,PPR_2|PF13041.2|0.07,PPR_2|PF13041.2|16,PPR_2|PF13041.2|8.7e+03,PPR|PF01535.16|47,PPR|PF01535.16|0.012,PPR|PF01535.16|0.26,PPR|PF01535.16|8.1e-07,PPR|PF01535.16|0.00031,PPR|PF01535.16|0.00083,PPR|PF01535.16|2.3e-05,PPR|PF01535.16|1.7,PPR|PF01535.16|0.00041,PPR|PF01535.16|0.26,PPR|PF01535.16|1e+04,PPR|PF01535.16|5.1e+03,DYW_deaminase|PF14432.2|9e-42,PPR_1|PF12854.3|8.3e+02,PPR_1|PF12854.3|3.2e+02,PPR_1|PF12854.3|1.3e+03,PPR_1|PF12854.3|21,PPR_1|PF12854.3|6.2e-06,PPR_1|PF12854.3|0.64,PPR_1|PF12854.3|0.025,PPR_1|PF12854.3|0.085,PPR_1|PF12854.3|0.0013,PPR_3|PF13812.2|70,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|0.32,PPR_3|PF13812.2|0.086,PPR_3|PF13812.2|26,PPR_3|PF13812.2|0.27,PPR_3|PF13812.2|5.1,PPR_3|PF13812.2|0.36,PPR_3|PF13812.2|9.6,PPR_3|PF13812.2|1.6e+04 S_Transcript_107641:131-2170(+)
ATGATAGTTGGCCGTTTTTGCTTCACCCGCCACTTCTCAACGGCCATTCAACTGAATGTTCTGTCCTCACCCATTCAAAGACCTATACTTGCTCAGAAAAATGAAGTTCTCACTGAGGACCTTTGTAACCAAATTTTGGATTCATACCCAGATTCCAAAACCTTGAAAAAACTTCACACCCAGATAATAAATGATAAAATTCTTCATTCAAACCCATCACTTGTACTCAAATTGATCCGAGCATACGCTGGTTGTGGTGAATTGGGTATTGCCCGCAACCTGTTCGACAAATTTCCTCAGGGAAATATCATCTTTTTCAATGTTATGATCAGGAGCTATGTTACCCACCGTCATTATCAAGATGCTCTTTGTGTTTTCAAGAGCATGTCTAGCTATGTTATTAGACCTGATCATTATACATACCCATGTGTTTTAAAGGCTTGTTCTGGGTCAGAAAATTTGTGGGTTGGGTTGCAAATTCATACTCAAGTTTGTAAAGTTGGGCTGGATTTGAATTTGTTTGTTGGTAATGGGTTAGTGGCTATGTATGGGAAATGTGGCTGTTTGATTGAGGCTAGAAAAGTTCTTGATGGGATGCCTGTAAGAGATATAGTTTCGTGGAATTCAATGGTTGCTGGGTATGCTCAAAAGGGGCAGTTTGATCATGCCGTGAAGCTCTGCAGAGAAATGGAGTTGTTGAAGGTGATCCCGAATGCTGGAACGATGGCGAGTTTACTTCCTGCTGTGACTAACACTTCATTTGAGAATGTTGCATTTGTTGAGGAAATGTTTGAGAAAGTGGGTAAGAAGAGTTTAGTCTCATGGAATGTAATGATAGCAGTGTATATGAACAACTCAATGGCTGCTGAAGCAATTGATCTTTATTCACAAATGGAAGCAATTGGAATGGACCCTGATGGGATTACTATTACTAGTGTTCTCCCTGCTTGTGGGGATCTTTCAGCTTTGTCAGTAGGAAGGAAGATTCATGATTATGTAGAAAGGAAGAGATTTCGACCAAATTTGTCCGTTGAGAATGCATTAATCGACATGTATGCCAAGTGTGGTTGCCTGAAGGAAGCAAGGAAAGTCTTTGATACCTTGCGGGTTCGTGATGTTGTGTCTTGGACTTCTATGATTTTTGCTTATGGTGTGAGTGGACGAGGTCGGGATGCTGTTGCTCTTTTTGCTGGAATGAGAGACGAGGGCTTTGTTCCTGACTCCATTGCTTTTGTTGCTGTTATGTCGGCTTGCAGTCATTCAGGAATGTTGGAAGAAGGGCGACATCACTATAAGGTAATGATGGAGGGATACAATATAGCCCCAAGGTTAGAGCATTATTGTTGCATGGTTGACCTGTTAGGACGCGCAGGGAGAGTGGATGAGGCTTTCTCTTTCATCAAGGAGATGCCGATTGAGCCAAATGAAAGAGTTTGGGGATCTCTATTGGGTGCTTGTCGTGTCCACTCCAACATGAATATTGGACTGATAGCTGCTGACTGTCTGTTCCAGATGGCTCCTGAACAAGCTGGATACTATGTCCTGTTATCTAACATTTATGCCAAAGCTGGTAAATGGAAGGAGGTTAGCAAAATTAGGTCAATCATGAAGAGTAAAGGTATGAAGAAAACACCTGGTATTAGTAATGTGGAGCACAAAGATCAGGTTTACACTTTTCTTTCAGGGGACCAATCCCATCCACAGTCTAAAGAGATTTGTGAAAAGTTGGCTGTGTTAGTTGGAAAAATGAAAGAGGAAGGCTATGTTCCTGAGACGGATTCTGCTCTTCATGATGTTGAAGAGGAGGATAAAGAATGTCATCTTTCCGTCCACAGTGAGAAGTTGGCTATTGCTTTTGCTCTTATAAATATTAAACCTCCCACGATAATCAGAATTACTAAGAACCTGCGTGTCTGTGGAGATTGTCACTCTGCAATCAAGCTCATCTCCAAGATCACTGATCGGGAAATAGTCGTTAGGGATACAAATAGGTTTCATACTTTCAAGAATGGGATTTGTTCATGTGGAGATTATTGGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_107641.p1 GENE.S_Transcript_107641~~S_Transcript_107641.p1 ORF type:complete len:680 (+),score=130.34,PPR_2|PF13041.2|3.3e+03,PPR_2|PF13041.2|5.4e-09,PPR_2|PF13041.2|1.3e+03,PPR_2|PF13041.2|1e-07,PPR_2|PF13041.2|1.5e-07,PPR_2|PF13041.2|0.064,PPR_2|PF13041.2|3.3e-07,PPR_2|PF13041.2|0.07,PPR_2|PF13041.2|16,PPR_2|PF13041.2|8.7e+03,PPR|PF01535.16|47,PPR|PF01535.16|0.012,PPR|PF01535.16|0.26,PPR|PF01535.16|8.1e-07,PPR|PF01535.16|0.00031,PPR|PF01535.16|0.00083,PPR|PF01535.16|2.3e-05,PPR|PF01535.16|1.7,PPR|PF01535.16|0.00041,PPR|PF01535.16|0.26,PPR|PF01535.16|1e+04,PPR|PF01535.16|5.1e+03,DYW_deaminase|PF14432.2|9e-42,PPR_1|PF12854.3|8.3e+02,PPR_1|PF12854.3|3.2e+02,PPR_1|PF12854.3|1.3e+03,PPR_1|PF12854.3|21,PPR_1|PF12854.3|6.2e-06,PPR_1|PF12854.3|0.64,PPR_1|PF12854.3|0.025,PPR_1|PF12854.3|0.085,PPR_1|PF12854.3|0.0013,PPR_3|PF13812.2|70,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|0.32,PPR_3|PF13812.2|0.086,PPR_3|PF13812.2|26,PPR_3|PF13812.2|0.27,PPR_3|PF13812.2|5.1,PPR_3|PF13812.2|0.36,PPR_3|PF13812.2|9.6,PPR_3|PF13812.2|1.6e+04 S_Transcript_107641:131-2170(+)
MIVGRFCFTRHFSTAIQLNVLSSPIQRPILAQKNEVLTEDLCNQILDSYPDSKTLKKLHTQIINDKILHSNPSLVLKLIRAYAGCGELGIARNLFDKFPQGNIIFFNVMIRSYVTHRHYQDALCVFKSMSSYVIRPDHYTYPCVLKACSGSENLWVGLQIHTQVCKVGLDLNLFVGNGLVAMYGKCGCLIEARKVLDGMPVRDIVSWNSMVAGYAQKGQFDHAVKLCREMELLKVIPNAGTMASLLPAVTNTSFENVAFVEEMFEKVGKKSLVSWNVMIAVYMNNSMAAEAIDLYSQMEAIGMDPDGITITSVLPACGDLSALSVGRKIHDYVERKRFRPNLSVENALIDMYAKCGCLKEARKVFDTLRVRDVVSWTSMIFAYGVSGRGRDAVALFAGMRDEGFVPDSIAFVAVMSACSHSGMLEEGRHHYKVMMEGYNIAPRLEHYCCMVDLLGRAGRVDEAFSFIKEMPIEPNERVWGSLLGACRVHSNMNIGLIAADCLFQMAPEQAGYYVLLSNIYAKAGKWKEVSKIRSIMKSKGMKKTPGISNVEHKDQVYTFLSGDQSHPQSKEICEKLAVLVGKMKEEGYVPETDSALHDVEEEDKECHLSVHSEKLAIAFALINIKPPTIIRITKNLRVCGDCHSAIKLISKITDREIVVRDTNRFHTFKNGICSCGDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST