Transcript Information: S_Transcript_107840.p1


Annotated TAIR IDAT5G15450.1
Annotated Gene Namecasein lytic proteinase B3
Annotated Gene Symbol(s)APG6, CLPB3, CLPB-P
Annotation TypeOrtholog
Chromosome Positionchr5:5014399-5018255 | Reverse length=968
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 137.078788237779
Replicate 237.680269806093
Replicate 347.152368148368
Condition 2: 8 Hour
Replicate 137.292204517806
Replicate 237.339735114723
Replicate 333.508773712019
Condition 3: 24 Hour
Replicate 144.336857503382
Replicate 240.396681512488
Replicate 341.607356194344


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_107840.p1 GENE.S_Transcript_107840~~S_Transcript_107840.p1 ORF type:complete len:979 (+),score=247.38,AAA_2|PF07724.10|0.059,AAA_2|PF07724.10|2.2e-55,Clp_N|PF02861.16|1.4e-15,Clp_N|PF02861.16|4.3e-11,AAA|PF00004.25|3.7e-14,AAA|PF00004.25|2.8e-09,ClpB_D2-small|PF10431.5|6e+03,ClpB_D2-small|PF10431.5|2.1e-24,AAA_5|PF07728.10|0.00086,AAA_5|PF07728.10|7.2e+03,AAA_5|PF07728.10|7.8e-12,AAA_16|PF13191.2|5.6e-05,AAA_16|PF13191.2|6.4e+02,AAA_16|PF13191.2|0.024,AAA_16|PF13191.2|4.3e+03,Sigma54_activat|PF00158.22|0.091,Sigma54_activat|PF00158.22|2e-06,AAA_17|PF13207.2|0.61,AAA_17|PF13207.2|9.3e-05,IstB_IS21|PF01695.13|0.013,IstB_IS21|PF01695.13|0.058,AAA_18|PF13238.2|0.016,AAA_18|PF13238.2|5e+03,AAA_18|PF13238.2|0.068,AAA_14|PF13173.2|0.045,AAA_14|PF13173.2|0.13,AAA_22|PF13401.2|3.7e+03,AAA_22|PF13401.2|0.076,AAA_22|PF13401.2|4.5e+02,AAA_22|PF13401.2|1.2e+04,AAA_22|PF13401.2|0.3 S_Transcript_107840:273-3209(+)
ATGACAACCACAAACTTGGTTGCTAGAGGGCATCTCACACCAGCAAACACTGGGGTCAGAAATGCCTTATTCTCTCAACCCATTGTATCTTTTGGCCTTACTTTAAGACCCAGTTCAGTAAAGTTCATAAAAGCCTTGAAATTGGGTAAGAACTTCAACAATGTTTCTCTGAATAGGAGTTCTGGGGCTACCAAGAAGAATTCAAGGTCAGGGTCTTTTGTGGTCAAGTGTGAAGCTTCAACTGGGAGGATTACCCAGCAAGAATTTACGGAAATGGCATGGCAAGCAATTGTTTCTTCGCCAGAAGTGGCAAAGGAGAATAAGCACCAAATAGTGGAAACGGAGCATTTAATGAAAGCTCTACTGGAGCAGAAGAATGGGCTTGCTCGTCGTATTTTCTCCAAAGCCGGAGTTGACAACACCCGCTTGCTTGAAGCAACCGATAAGTATATACAACGACAACCGAAGGTACTGACTGAGTCTGCTGGTTCTATGTTGGGAAGAGATCTAGAAGCCCTGATTCAGCGAGCTAGGGACTACAAGAAAGAATATGGAGACTCCTTTGTGTCAGTGGAGCATTTGGTTCTTGCTTTTACTCAAGATAAACGATTTGGAAAACAGTTGTTCAGTGACTTTCGACTTTCTGAGAAAACATTGCGGTCTGCTATACAGGCTGTAAGGGGACGCCAATCAGTCATTGACCAAGATCCTGAAGGGAAATATGAAGCACTTGAGAAGTATGGAAAAGATTTGACCGCAATGGCAAGAGAAGGAAAGCTTGACCCAGTGATAGGAAGGGATGATGAGATACGTAGATGTATCCAAATTCTTTCCAGGAGAACCAAAAATAATCCTGTTCTGATCGGTGAACCTGGTGTGGGAAAAACTGCAATTGCTGAGGGGCTTGCTCAGAGGATAGTTGAAGGCGATGTTCCTCAAGCTCTGATGGACCGTAAGTTGATTTCTCTTGACATGGGAGCACTCATTGCTGGAGCTAAATATCGTGGAGAATTCGAGGATCGTCTGAAGGCTGTCTTAAAGGAAGTGACTGAGGCTGAGGGTCAGACAATCCTTTTTATCGATGAGATTCACACTGTGGTAGGAGCAGGTGCTACGAATGGTGCAATGGATGCTGGAAATCTGTTGAAGCCTATGCTGGGTCGTGGAGAGTTGCGATGCATTGGTGCTACTACACTTGATGAATATCGTAAATACATTGAGAAAGATCCAGCACTGGAGCGGCGATTTCAACAGGTTTATGTTGATCAGCCAAGTGTGGAAGATACTGTCTCGATATTACGTGGACTTCGTGAGAGATATGAGCTGCATCATGGGGTTAGGATTTCTGACAGTGCTCTTGTAGAGGCTGCAGTGCTCTCTGATCGTTACATTAGTGGGCGTTTCTTACCTGACAAAGCTATTGACTTGGTTGATGAAGCTGCTGCTAAACTGAAAATGGAGATCACTTCAAAACCTACTGCCCTTGATGAGATCAACCGTTCAGTGTTGAAGCTGGAGATGGAAAGGCTTTCTCTTAAGAATGATACTGACAAAGCTTCAAAGGAGAGGCTTAACCGACTTGACACAGAGCTTTCCCTACTAAAGGAAAAGCAAGCTGCATTGACTGAACAATGGGAGCATGAAAAAACTGTAATGACACGTATCCAATCAATTAAAGAAGAGATTGACAGGGTGAATATTGAGATCCAACAAGCTGAGCGAGAGTATGATCTTAATCGAGCTGCTGAGCTGAAGTATGGCAGCCTGAACTCGCTTCAGCGTCAGCTGGAAAGTGCAGAGAAAGAGCTGGATGAATACATGAAGTCTGGGAAGTCGATGTTACGGGAAGAAGTAACTGGGAATGACATTGCTGAAATAGTCAGCAAGTGGACTGGAATTCCTGTTTCCAAGCTACAACAGTCAGAGAGGGAGAAACTCTTGCATCTGGAAGAAGAGCTGCATAGACGTGTTGTGGGCCAAGATCCTGCAGTGCAAGCTGTAGCTGAGGCGATTCAGCGTTCTAGAGCTGGACTTTCAGATCCTCACCGTCCGATTGCTAGTTTCATGTTCATGGGGCCCACAGGTGTGGGAAAGACAGAGCTAGCAAAGGCACTTGCCTCTTATTTGTTTAACACTGAGGAAGCCCTTGTGCGGATCGATATGAGTGAATACATGGAAAAACATGCTGTGTCAAGACTGATAGGTGCCCCACCTGGCTATGTGGGCTACGAGGAAGGTGGCCAATTAACAGAGATAGTTCGGAGGAGACCATATGCAGTAATCCTATTTGATGAAATTGAAAAGGCCCATAGTGATGTCTTCAATGTATTCCTTCAAATTCTGGATGATGGCAGGGTGACAGATTCACAAGGACGGACGGTGAGCTTCACTAACACTGTCATTATTATGACATCAAATGTAGGATCACAATACATTCTCAGTGCTGATGATGACACATCACCGAAGGAGGTCACTTATGAAATAATAAAGCAAAGAGTGATGGATGCAGCTCGATCAATTTTCCGTCCCGAGTTCATGAATAGAGTAGATGAATACATAGTCTTCCAGCCCCTTGACCGAGATCAAATTAGCAGCATTGTCCGTTTACAGCTGCAACGGGTACAGTCAAGGATTGCAGATCGCAAGATGAGAATTCAGGTGACAGATGCAGCAATTCAGCTTCTTGGTAGCCTGGGATATGATCCGAACTATGGTGCTAGGCCTGTCAAACGTGTTATACAACAACACGTTGAGAATGAAATTGCAAAAGGTATCTTGAGAGGGGAATTCAAGGAAGAAGACGCCATTCTTATTGATACAGAGCTCACAGCATTCTCAAATGGTCAGCTTCCACAACAGAAGTTGGTTTTCAAAAAACTAGAATCTGATTCAAGCTCTCCAAGTGCGGAATCAAAGGAAGCTTTCTCACAACTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_107840.p1 GENE.S_Transcript_107840~~S_Transcript_107840.p1 ORF type:complete len:979 (+),score=247.38,AAA_2|PF07724.10|0.059,AAA_2|PF07724.10|2.2e-55,Clp_N|PF02861.16|1.4e-15,Clp_N|PF02861.16|4.3e-11,AAA|PF00004.25|3.7e-14,AAA|PF00004.25|2.8e-09,ClpB_D2-small|PF10431.5|6e+03,ClpB_D2-small|PF10431.5|2.1e-24,AAA_5|PF07728.10|0.00086,AAA_5|PF07728.10|7.2e+03,AAA_5|PF07728.10|7.8e-12,AAA_16|PF13191.2|5.6e-05,AAA_16|PF13191.2|6.4e+02,AAA_16|PF13191.2|0.024,AAA_16|PF13191.2|4.3e+03,Sigma54_activat|PF00158.22|0.091,Sigma54_activat|PF00158.22|2e-06,AAA_17|PF13207.2|0.61,AAA_17|PF13207.2|9.3e-05,IstB_IS21|PF01695.13|0.013,IstB_IS21|PF01695.13|0.058,AAA_18|PF13238.2|0.016,AAA_18|PF13238.2|5e+03,AAA_18|PF13238.2|0.068,AAA_14|PF13173.2|0.045,AAA_14|PF13173.2|0.13,AAA_22|PF13401.2|3.7e+03,AAA_22|PF13401.2|0.076,AAA_22|PF13401.2|4.5e+02,AAA_22|PF13401.2|1.2e+04,AAA_22|PF13401.2|0.3 S_Transcript_107840:273-3209(+)
MTTTNLVARGHLTPANTGVRNALFSQPIVSFGLTLRPSSVKFIKALKLGKNFNNVSLNRSSGATKKNSRSGSFVVKCEASTGRITQQEFTEMAWQAIVSSPEVAKENKHQIVETEHLMKALLEQKNGLARRIFSKAGVDNTRLLEATDKYIQRQPKVLTESAGSMLGRDLEALIQRARDYKKEYGDSFVSVEHLVLAFTQDKRFGKQLFSDFRLSEKTLRSAIQAVRGRQSVIDQDPEGKYEALEKYGKDLTAMAREGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAIAEGLAQRIVEGDVPQALMDRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTEAEGQTILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPSVEDTVSILRGLRERYELHHGVRISDSALVEAAVLSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLKNDTDKASKERLNRLDTELSLLKEKQAALTEQWEHEKTVMTRIQSIKEEIDRVNIEIQQAEREYDLNRAAELKYGSLNSLQRQLESAEKELDEYMKSGKSMLREEVTGNDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHRRVVGQDPAVQAVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYLFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEIVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILSADDDTSPKEVTYEIIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLQRVQSRIADRKMRIQVTDAAIQLLGSLGYDPNYGARPVKRVIQQHVENEIAKGILRGEFKEEDAILIDTELTAFSNGQLPQQKLVFKKLESDSSSPSAESKEAFSQL*

Click here to download the sequence:
Link to NCBI Protein BLAST