Transcript Information: S_Transcript_108024.p1


Annotated TAIR IDAT1G52620.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:19603828-19606287 | Forward length=819
E-Value6.3E-274
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.431151148159
Replicate 22.364830062194
Replicate 33.7514457076264
Condition 2: 8 Hour
Replicate 14.4417073620338
Replicate 23.8149315585405
Replicate 34.3099034134311
Condition 3: 24 Hour
Replicate 13.32595668249
Replicate 23.7542976545472
Replicate 33.8708618697255


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_108024.p1 GENE.S_Transcript_108024~~S_Transcript_108024.p1 ORF type:complete len:821 (+),score=144.65,PPR_2|PF13041.2|0.0088,PPR_2|PF13041.2|3.8e-07,PPR_2|PF13041.2|1.2e-16,PPR_2|PF13041.2|1e-08,PPR_2|PF13041.2|5.4e-06,PPR_2|PF13041.2|4.8e-10,PPR_2|PF13041.2|7.7e-08,PPR_2|PF13041.2|0.00024,PPR_2|PF13041.2|5.9e-10,PPR_2|PF13041.2|0.0019,PPR_2|PF13041.2|3.6e-18,PPR_2|PF13041.2|1.8e-15,PPR_2|PF13041.2|3.9e-20,PPR_2|PF13041.2|6.3e-10,PPR_2|PF13041.2|1.1e+04,PPR_2|PF13041.2|0.00011,PPR_1|PF12854.3|21,PPR_1|PF12854.3|7.4e+02,PPR_1|PF12854.3|3.1,PPR_1|PF12854.3|4e-14,PPR_1|PF12854.3|2e-07,PPR_1|PF12854.3|3.7e+03,PPR_1|PF12854.3|1.1e-08,PPR_1|PF12854.3|1.4e-06,PPR_1|PF12854.3|0.0012,PPR_1|PF12854.3|9.7e-06,PPR_1|PF12854.3|3.4e-08,PPR_1|PF12854.3|3.7e-08,PPR_1|PF12854.3|7.8e-07,PPR_1|PF12854.3|1.6e-13,PPR_1|PF12854.3|3.4e-12,PPR_1|PF12854.3|0.33,PPR_1|PF12854.3|1.2e+02,PPR_1|PF12854.3|78,PPR|PF01535.16|0.23,PPR|PF01535.16|21,PPR|PF01535.16|0.15,PPR|PF01535.16|5.1,PPR|PF01535.16|1.1e-07,PPR|PF01535.16|2e-07,PPR|PF01535.16|89,PPR|PF01535.16|0.0011,PPR|PF01535.16|0.0054,PPR|PF01535.16|0.0017,PPR|PF01535.16|0.00028,PPR|PF01535.16|0.00017,PPR|PF01535.16|1e-07,PPR|PF01535.16|1.6e-06,PPR|PF01535.16|1.6e-09,PPR|PF01535.16|1.4e-07,PPR|PF01535.16|1.2e+03,PPR|PF01535.16|4.4e+03,PPR|PF01535.16|0.0083,PPR|PF01535.16|6.8e+03,PPR_3|PF13812.2|0.46,PPR_3|PF13812.2|3.4e+02,PPR_3|PF13812.2|9.9,PPR_3|PF13812.2|0.00029,PPR_3|PF13812.2|0.0003,PPR_3|PF13812.2|0.053,PPR_3|PF13812.2|0.19,PPR_3|PF13812.2|0.061,PPR_3|PF13812.2|0.0018,PPR_3|PF13812.2|0.11,PPR_3|PF13812.2|0.0016,PPR_3|PF13812.2|3.6e-05,PPR_3|PF13812.2|0.00013,PPR_3|PF13812.2|1.5,PPR_3|PF13812.2|8.2e+03,PPR_3|PF13812.2|2.5e+03,MRP-S27|PF10037.5|2.4,MRP-S27|PF10037.5|1.3e+02,MRP-S27|PF10037.5|17,MRP-S27|PF10037.5|0.018,MRP-S27|PF10037.5|7.1,TPR_11|PF13414.2|9e+02,TPR_11|PF13414.2|8.6e+02,TPR_11|PF13414.2|82,TPR_11|PF13414.2|0.12,TPR_11|PF13414.2|15,TPR_11|PF13414.2|3e+03 S_Transcript_108024:204-2666(+)
ATGTCCAAGAGACTCCTTTCTCTCATCAAACCTCGCCAAAACCCCAAACCCAATTCACCAAACAGAATTTACTATGAACCCCATATCAAGAAACTTGCCAATGAAGCTTGTCAATTGCTTAAAACTCATCAAAATTGGGACCAAACACTTGAAACCCTTCTCAATAAAGAGTCAGTTGATGCCTCTGAAATTGCCCATCTTGTATTCGATAGAATAAAGGACGTTTCTTTGGGTTTGAGGTTCTATGATTGGTTTATGGAAAGAAAGTTTTGTTCTTTCCTTGATGGGTATGCTTTTTCTTCCCTTTTAAAGCTCTTAGCAAAGAATAGAGTTTTTTCTGAGGTTGAAAATGTGTTAAGTTGCATGAAAAGTCATGGTCTTTTGCCTACTATTGAAGCTTTTGATATGTTAATTAGAGCTTATGCTGATGCATTGTTAGTTGATAAAGCTAGGGACTTTTATGAATTTGTGAGGGATACATACTGTTGTATGCCTAGTGCTATTGCAAGCAATTCCTTACTTATTGCTTTGGTAGAAAAGGGTCAATTTGCGGTTGCACATCAGGTGTATGATGAAATGCTTGAGAGAGATTGTTTAGATAATTATAGTACTTGTATAATGGTGAGGGGTTTTTGTGAGCAAGGTAAAGTTGAGAACGGGGTCAAGTTGATTGAGGGTAGGTGGGGAAAGGGTTGCGTGCCGAATGTCGTGTTTTACAATACACTTATTGATGGGTATTGTAAGAGAGGTGATATTGGAAGTGCTAATAGGCTTTTACATGAGATGAAGTTCAAGGGGTTTTTACCTACTTTGGAGACCTATGGTGCTATAATAAATGGCCTTTGCAAAGATGGGAATTTTCAGGAGGTTGATAAACTTTTGGAGGAGATGAAGATGAGGGGTTTGAGGATCAATGTTCAGATTTATAATAATATAGCTGATGCCAAGATTAAACACGGTTGTGCAGCTGAACCTTTTGAGATGATAAGAAAACTCAAGGAGAATGACTGTAAGCCAGATATCATGACATTCAACACCTTAATTTCTGGTTCATGTTCTAGAGGGAAAATAGAGGAATCCTGTGCTCTTCTTGAGCAAGCTATAAAGAGGGGTTTGAAACCTGATCAATATAGTTATACCCCTTTTGTTCATTTTTATTGTAAACAAGGGGACATGGATTCAGCCTCCTGTTTGCTCATCGAAATGACAGAGAGAGGTCATCCACCTGATATGGTTACTTATGGTGCTCTCGTCCATGGACTTGTTAGTAGAGGTGATATTGAAGCTGCATCAAGTATCCGGAAGAAAATGATGGGAAAGGGAGTTGTGCCTGATGCTGGAATCTACAATGTTCTAATGAGTGCGTTATTCAGAAGAGGGTTGCTCTCCGCTGCTAAGCAGTTGCTATGCGAGATGCTTGATGAAAATGTACATCCTGATGCATTCATCTATACTACTTTAGTTGATGGCTTTGCTAGAAATGGTAATATAAATGAGGCGGAAAAGATATTTCAGCTTGAATTGGAGAAAGATTTGGATCCTGGTGTCGTGGGATACAATGCCATGATTAAGGGGTACTGCAAACTCGGAAGAATGAACGATGCAATCCTCTGCTTCAGGAAAATGGTAAAGAGACGACTCTCTCCAGATGAGTTTACTTATTCTACACTAATAGATGGTTATGTGAAGCAGCATGACTTTAGTAATGCATTGACGATGTTCAGAGAGATGGTAGAAAATAAATGTAAACCAAACATAGTTACATATACATCTCTTATTAATGGATATTGCCGTCAAGGAAATACTTCTGAAGCTGAAAAAAAATTCAGAGAGATGCAATCTCTTGGTCTGGTCCCTAATGTTATCACATACAGCATACTTATTGGTGGATTTTGCAAGGGGGGTAATCTTGTTAAAGCAGTATCTATCTTTGAAGAGATGCTAATGAATAAGTGCATTCCTAATGACGTGACATTTAATTACCTTGTAAATGGATTTGTGAATATTGTGCCTGCTGCCATATGTAACATAGGAAATGGACTTGAAAACCATGAAAAATCAATCTTTCTGAAATTCTTCAAAAGAATGAATACGAGTGGTTTGCCTTCAAGAAAATCTGTCTATAATTGTATTTTTATCTGCCTTTGTCAGCATCGGATGCTCTCAACTGCTTTGCAGCTGAGAAAGAAAATGATGAGTAGCAATGTTCTCGAAGATTCATTTACTTTTGTGGCCGTGCTCCATGGTATTTGCTTGGAAGGAAGGTCAAGGGAATGGAGAAGTATAATCAAGTATGATTTGAATGAGGAAGGGATATATAATGCCATTAGTTACTTGAAGGTGTTGGACATGCACCTCCCAGATGGAATATCATCTGAGGCTTCAGTCATTTTGCACCAGTTACTTAAGGATTGCCAGTTTAGTGACCATGAAGCAAATAATATTAAAGTTTCAGCAAGCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_108024.p1 GENE.S_Transcript_108024~~S_Transcript_108024.p1 ORF type:complete len:821 (+),score=144.65,PPR_2|PF13041.2|0.0088,PPR_2|PF13041.2|3.8e-07,PPR_2|PF13041.2|1.2e-16,PPR_2|PF13041.2|1e-08,PPR_2|PF13041.2|5.4e-06,PPR_2|PF13041.2|4.8e-10,PPR_2|PF13041.2|7.7e-08,PPR_2|PF13041.2|0.00024,PPR_2|PF13041.2|5.9e-10,PPR_2|PF13041.2|0.0019,PPR_2|PF13041.2|3.6e-18,PPR_2|PF13041.2|1.8e-15,PPR_2|PF13041.2|3.9e-20,PPR_2|PF13041.2|6.3e-10,PPR_2|PF13041.2|1.1e+04,PPR_2|PF13041.2|0.00011,PPR_1|PF12854.3|21,PPR_1|PF12854.3|7.4e+02,PPR_1|PF12854.3|3.1,PPR_1|PF12854.3|4e-14,PPR_1|PF12854.3|2e-07,PPR_1|PF12854.3|3.7e+03,PPR_1|PF12854.3|1.1e-08,PPR_1|PF12854.3|1.4e-06,PPR_1|PF12854.3|0.0012,PPR_1|PF12854.3|9.7e-06,PPR_1|PF12854.3|3.4e-08,PPR_1|PF12854.3|3.7e-08,PPR_1|PF12854.3|7.8e-07,PPR_1|PF12854.3|1.6e-13,PPR_1|PF12854.3|3.4e-12,PPR_1|PF12854.3|0.33,PPR_1|PF12854.3|1.2e+02,PPR_1|PF12854.3|78,PPR|PF01535.16|0.23,PPR|PF01535.16|21,PPR|PF01535.16|0.15,PPR|PF01535.16|5.1,PPR|PF01535.16|1.1e-07,PPR|PF01535.16|2e-07,PPR|PF01535.16|89,PPR|PF01535.16|0.0011,PPR|PF01535.16|0.0054,PPR|PF01535.16|0.0017,PPR|PF01535.16|0.00028,PPR|PF01535.16|0.00017,PPR|PF01535.16|1e-07,PPR|PF01535.16|1.6e-06,PPR|PF01535.16|1.6e-09,PPR|PF01535.16|1.4e-07,PPR|PF01535.16|1.2e+03,PPR|PF01535.16|4.4e+03,PPR|PF01535.16|0.0083,PPR|PF01535.16|6.8e+03,PPR_3|PF13812.2|0.46,PPR_3|PF13812.2|3.4e+02,PPR_3|PF13812.2|9.9,PPR_3|PF13812.2|0.00029,PPR_3|PF13812.2|0.0003,PPR_3|PF13812.2|0.053,PPR_3|PF13812.2|0.19,PPR_3|PF13812.2|0.061,PPR_3|PF13812.2|0.0018,PPR_3|PF13812.2|0.11,PPR_3|PF13812.2|0.0016,PPR_3|PF13812.2|3.6e-05,PPR_3|PF13812.2|0.00013,PPR_3|PF13812.2|1.5,PPR_3|PF13812.2|8.2e+03,PPR_3|PF13812.2|2.5e+03,MRP-S27|PF10037.5|2.4,MRP-S27|PF10037.5|1.3e+02,MRP-S27|PF10037.5|17,MRP-S27|PF10037.5|0.018,MRP-S27|PF10037.5|7.1,TPR_11|PF13414.2|9e+02,TPR_11|PF13414.2|8.6e+02,TPR_11|PF13414.2|82,TPR_11|PF13414.2|0.12,TPR_11|PF13414.2|15,TPR_11|PF13414.2|3e+03 S_Transcript_108024:204-2666(+)
MSKRLLSLIKPRQNPKPNSPNRIYYEPHIKKLANEACQLLKTHQNWDQTLETLLNKESVDASEIAHLVFDRIKDVSLGLRFYDWFMERKFCSFLDGYAFSSLLKLLAKNRVFSEVENVLSCMKSHGLLPTIEAFDMLIRAYADALLVDKARDFYEFVRDTYCCMPSAIASNSLLIALVEKGQFAVAHQVYDEMLERDCLDNYSTCIMVRGFCEQGKVENGVKLIEGRWGKGCVPNVVFYNTLIDGYCKRGDIGSANRLLHEMKFKGFLPTLETYGAIINGLCKDGNFQEVDKLLEEMKMRGLRINVQIYNNIADAKIKHGCAAEPFEMIRKLKENDCKPDIMTFNTLISGSCSRGKIEESCALLEQAIKRGLKPDQYSYTPFVHFYCKQGDMDSASCLLIEMTERGHPPDMVTYGALVHGLVSRGDIEAASSIRKKMMGKGVVPDAGIYNVLMSALFRRGLLSAAKQLLCEMLDENVHPDAFIYTTLVDGFARNGNINEAEKIFQLELEKDLDPGVVGYNAMIKGYCKLGRMNDAILCFRKMVKRRLSPDEFTYSTLIDGYVKQHDFSNALTMFREMVENKCKPNIVTYTSLINGYCRQGNTSEAEKKFREMQSLGLVPNVITYSILIGGFCKGGNLVKAVSIFEEMLMNKCIPNDVTFNYLVNGFVNIVPAAICNIGNGLENHEKSIFLKFFKRMNTSGLPSRKSVYNCIFICLCQHRMLSTALQLRKKMMSSNVLEDSFTFVAVLHGICLEGRSREWRSIIKYDLNEEGIYNAISYLKVLDMHLPDGISSEASVILHQLLKDCQFSDHEANNIKVSAS*

Click here to download the sequence:
Link to NCBI Protein BLAST