Transcript Information: S_Transcript_10828.p6


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value8E-17
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10.19564578272599
Replicate 20.41049263559131
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_10828.p6 GENE.S_Transcript_10828~~S_Transcript_10828.p6 ORF type:complete len:109 (-),score=4.79 S_Transcript_10828:1735-2061(-)
ATGTACAGCATTATGTTCATCCCAAAGTCTTTTAGCATTCATGAAATAGGAAGAAATATTGTTGTCCCCTTGACTCATGTTACACACATCTTTCTGAGTCTGAAACAGTTGGGCTCCATTTGTTTGGCCATACCTCTCACAAAGATCTTTCCAGATAGCATGGGCAGAATTACAATACAAGACACTCTCAGCTATGTTTTTAGAAAGAGCATTCAACAACCAAGAAGTAACCATATTATCACATCTGATCCAGGTTCGATAAAGAGGATTGTCAAGGTCAGGACAAGCACAAGAACCATCAATGAAACCAGTTTTATTCTTTGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_10828.p6 GENE.S_Transcript_10828~~S_Transcript_10828.p6 ORF type:complete len:109 (-),score=4.79 S_Transcript_10828:1735-2061(-)
MYSIMFIPKSFSIHEIGRNIVVPLTHVTHIFLSLKQLGSICLAIPLTKIFPDSMGRITIQDTLSYVFRKSIQQPRSNHIITSDPGSIKRIVKVRTSTRTINETSFILC*

Click here to download the sequence:
Link to NCBI Protein BLAST