Transcript Information: S_Transcript_108422.p1


Annotated TAIR IDAT1G09910.1
Annotated Gene NameRhamnogalacturonate lyase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:3220151-3224451 | Reverse length=675
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.4441252039445
Replicate 28.3606360428477
Replicate 38.1536306895918
Condition 2: 8 Hour
Replicate 12.8540747943231
Replicate 22.2203639251458
Replicate 33.5259296790195
Condition 3: 24 Hour
Replicate 16.9969326067617
Replicate 28.315744397938
Replicate 38.1924234458723


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_108422.p1 GENE.S_Transcript_108422~~S_Transcript_108422.p1 ORF type:complete len:665 (+),score=103.80,Rhamnogal_lyase|PF06045.7|1.3e-90,CBM-like|PF14683.2|4.9e-57,fn3_3|PF14686.2|3.4e-29 S_Transcript_108422:143-2137(+)
ATGGCGAAAGGGAAATCGTGGATGTGTGGGTGCTGTGGTGGAGGTGGAAATGGAAGTGGGAGTTCAGGGCAGCCAACTGTTTCACCTGTTCAACTCCAAATTCTTGATCGTTATGTAGTATTAGATAATGGTTTACTGCAAGTGACACTGTCAAAGCCAGGGGGAATTGTCACTGGAATTAAATATAATGGCATTGACAATTTGCTTGAAGTTCGAAATGGAGAGGACAATAGAGGGTATTGGGATCTTGTATGGAATGACCCTAGTGCTGGGGGAGCTGGGAAATTCGATGTGATAAAAGGAAGTACTTTTGAAGTTATAATGTCAAATGAAGATCAGGTGGAAGTCTCCTTTTCTAGACGATGGGACTCCTCCTTGAAGGGCCAGTTAGTCCCCTTGAACATTGATAAAAGGTTTATTATGCTTCGTGGCTCATCTGGGTTCTACACCTATGCCATCTATGAGAAATTGAATGACTGGCCGGGGTTCAGCATGGGCGAAACTAGGATCACGTTCAAGCTCAACAAAGATAAGTTTCACTACATGGCTGTCGCGGATAACAGGCAAAGAGAAATGCCTTTGCCTGATGACAGAATGCCTGGAAGATGCCGACCCCTAGCCTACCCCGAAGCTGTTCTTCTCACCAACCCTGTAGAGCAGAACCTCAAAGGAGAGGTGGATGACAAATACCAATATTCATGCGATAACAAAGACATACTGGTCCATGGCTGGATTTGCACTGATCAGGCTACAGGATTTTGGCAAATTACACCCAGCTATGAATACCGGTCTGGTGGGCCTGTCAAACAAAACTTAACCTCCCATGTTGGCCCCACGTCCCTCTCGGTGTTTCTTAGTGCACATTATGCAGGGGATCCTCTGGTTCCCAAGTTTGAGGATGGGGAGCCTTGGAAAAAGGTTTTTGGTCCTGTTTTTATCTACTGTAATTCTTTGCCTAAGGAAAGCGATTGGCATTGGCTTTGGGAAGATGCTAAACAACAGATGATGATAGAAGCTCAGAGCTGGCCTTACAGCTTCCCAGCTTCGGAGGATTTTCCCCCATCCTATAAACGGGGTAATGTCAATGGCAGACTACTCATAAAAGACAGGTATGTTAGTGATGATTATATACCAGCAAGTGGAGCATATGTGGGATTAGCCCTGCCAGGGCCAGCTGGATCATGGCAGGCAGACAGCAAGGGTTACCAATTCTGGACAAGAGCAGATGAAAATGGCTATTTCCGCATCTATGGAATTCGAGAAGGGAATTACAATCTCTATGCCTGGGTCCCTGGTTTGATTGGAGACTATAAATGTGATGCTGACATTAACATAACTGCAGAATGTGATCTCCCAATGGGTGACTTGGTGTATGAGCCTCCAAGAGATGGACCGACCTTGTGGGAAATAGGAATCCCAGATCGTACTGCAGCAGAATTCTATGTTCCTGATCCTAATCCAACGTTTGTTAACAGACTTTATGTTAATCATCCTGACAGGTTTAGGCAATATGGTTTGTGGGAGAGATACGCAGAATTATATCCGAATGAAGATCTAGTTTACACTATTGGTGTCAGTGATTACCACAAGGATTGGTTCTTTGCTCAAGTTCCTAGGAAGAAAGAAAATGGATTTGTAGGAACAACATGGCAAATCAAGTTCAAACTCGACAAGGCAGACCAGAATGCAACCTACAAGTTGCGGTTAGCTGTAGCATCTGCAACACTTGCAGAAGTACAGGTGCGAGTCAACGATCCAACTGCAAATCGACCTGTATTCACAACAGGGTTGATAGGGAGAGATAACTCGGTTGCACGACATGGAATTCATGGTTTGTACTGGCTGTATAGCGTGGACATACAGGGGTCGAGGCTCGTACAAGGGGATAACACCATCTTTCTGACTCAACCAAGGAACCAGAGCCCATTCCAGGGTATCTTGTATGACTACTTGCGCCTTGAAGGGCCTCCTACATCATCTGCAAGCCAGTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_108422.p1 GENE.S_Transcript_108422~~S_Transcript_108422.p1 ORF type:complete len:665 (+),score=103.80,Rhamnogal_lyase|PF06045.7|1.3e-90,CBM-like|PF14683.2|4.9e-57,fn3_3|PF14686.2|3.4e-29 S_Transcript_108422:143-2137(+)
MAKGKSWMCGCCGGGGNGSGSSGQPTVSPVQLQILDRYVVLDNGLLQVTLSKPGGIVTGIKYNGIDNLLEVRNGEDNRGYWDLVWNDPSAGGAGKFDVIKGSTFEVIMSNEDQVEVSFSRRWDSSLKGQLVPLNIDKRFIMLRGSSGFYTYAIYEKLNDWPGFSMGETRITFKLNKDKFHYMAVADNRQREMPLPDDRMPGRCRPLAYPEAVLLTNPVEQNLKGEVDDKYQYSCDNKDILVHGWICTDQATGFWQITPSYEYRSGGPVKQNLTSHVGPTSLSVFLSAHYAGDPLVPKFEDGEPWKKVFGPVFIYCNSLPKESDWHWLWEDAKQQMMIEAQSWPYSFPASEDFPPSYKRGNVNGRLLIKDRYVSDDYIPASGAYVGLALPGPAGSWQADSKGYQFWTRADENGYFRIYGIREGNYNLYAWVPGLIGDYKCDADINITAECDLPMGDLVYEPPRDGPTLWEIGIPDRTAAEFYVPDPNPTFVNRLYVNHPDRFRQYGLWERYAELYPNEDLVYTIGVSDYHKDWFFAQVPRKKENGFVGTTWQIKFKLDKADQNATYKLRLAVASATLAEVQVRVNDPTANRPVFTTGLIGRDNSVARHGIHGLYWLYSVDIQGSRLVQGDNTIFLTQPRNQSPFQGILYDYLRLEGPPTSSASQW*

Click here to download the sequence:
Link to NCBI Protein BLAST