Transcript Information: S_Transcript_108425.p1


Annotated TAIR IDAT1G09890.1
Annotated Gene NameRhamnogalacturonate lyase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:3214237-3217386 | Reverse length=617
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.0167356062321
Replicate 21.245744432668
Replicate 31.0139394280731
Condition 2: 8 Hour
Replicate 11.5843529210351
Replicate 20.89753330352544
Replicate 30.31672879056436
Condition 3: 24 Hour
Replicate 10.87639205682919
Replicate 20.77454333767606
Replicate 31.5365584258689


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_108425.p1 GENE.S_Transcript_108425~~S_Transcript_108425.p1 ORF type:5prime_partial len:673 (+),score=111.43,Rhamnogal_lyase|PF06045.7|1.4e-86,CBM-like|PF14683.2|5.1e-57,fn3_3|PF14686.2|3.4e-29 S_Transcript_108425:3-2021(+)
AACAGCCTTTTTCTGTTAATTCTGACAATTCTATTTTTTTTAATAGAATTTTTTTCAGAAAGGCAGGACTATTTTGGTGGTAAAGTTTCGGCTATGTCATTCCCGGCAGTTCAACTAGAGATCCAAGATGATTATGTTGTGATTGACAATGGCATACTCCAAATGAAGATATCCAATCCAGATGGGATTGTTACAAAAATACAGTTCAATGGAATTGAAAACTTGCTTGAGGAAAAAAATGAAGAAGACAACAGAGGGTATTGGGATCTGAACTGGAGTGAAGCTGGATCTTTAGGAACAACAGGATTCTATGATAGGATCAAGGGAAAAAGCTTTCAAGTCATAGTAGAGGATGAAGACATGGTGGAAGTTTCCTTCACAAGGACATGGGATTCTTCTCTTAAAGGCAAACTTGTGCCATTGAACATTGACAAAAGGTTCATTGTGCTCCAGGGTTCGTCAGGGTTTTACTCCTATGCCATTTATGAGAAGTTGAAGGAATTTCCTGGATTCAATCTTCCTCAAACTAGGATTACTTTCAAGCTTAACAAAGACTGGTTTCACTACATGGCTGTAGCTGATAATAGGCAAAGGAAAATGCCTCTTCCTGATGACAGGTCACCAGAAAGATGCAAAGTTCTGGCTTATCCTGAAGCTGTTCTGCTTACTAACCCAATCGAGGAAGAATTCAAAGGAGAGGTGGATGACAAATACCAATATTCATGCGATAACAAAGACATACTGGTCCATGGCTGGATTTGCACTGATCAGGCTACAGGATTTTGGCAAATTACACCCAGCTATGAATACCGGTCTGGTGGGCCTGTCAAACAAAACTTAACCTCCCATGTTGGCCCCACGTCCCTCTCGGTGTTTCTTAGTGCACATTATGCAGGGGATCCTCTGGTTCCCAAGTTTGAGGATGGGGAGCCTTGGAAAAAGGTTTTTGGTCCTGTTTTTATCTACTGTAATTCTTTGCCTAAGGAAAGCGATTGGCATTGGCTTTGGGAAGATGCTAAACAACAGATGATGATAGAAGCTCAGAGCTGGCCTTACAGCTTCCCAGCTTCGGAGGATTTTCCCCCATCCTATAAACGGGGTAATGTCAATGGCAGACTACTCATAAAAGACAGGTATGTTAGTGATGATTATATACCAGCAAGTGGAGCATATGTGGGATTAGCCCTGCCAGGGCCAGCTGGATCATGGCAGGCAGACAGCAAGGGTTACCAATTCTGGACAAGAGCAGATGAAAATGGCTATTTCCGCATCTATGGAATTCGAGAAGGGAATTACAATCTCTATGCCTGGGTCCCTGGTTTGATTGGAGACTATAAATGTGATGCTGACATTAACATAACTGCAGAATGTGATCTCCCAATGGGTGACTTGGTGTATGAGCCTCCAAGAGATGGACCGACCTTGTGGGAAATAGGAATCCCAGATCGTACTGCAGCAGAATTCTATGTTCCTGATCCTAATCCAACGTTTGTTAACAGACTTTATGTTAATCATCCTGACAGGTTTAGGCAATATGGTTTGTGGGAGAGATACGCAGAATTATATCCGAATGAAGATCTAGTTTACACTATTGGTGTCAGTGATTACCACAAGGATTGGTTCTTTGCTCAAGTTCCTAGGAAGAAAGAAAATGGATTTGTAGGAACAACATGGCAAATCAAGTTCAAACTCGACAAGGCAGACCAGAATGCAACCTACAAGTTGCGGTTAGCTGTAGCATCTGCAACACTTGCAGAAGTACAGGTGCGAGTCAACGATCCAACTGCAAATCGACCTGTATTCACAACAGGGTTGATAGGGAGAGATAACTCGGTTGCACGACATGGAATTCATGGTTTGTACTGGCTGTATAGCGTGGACATACAGGGGTCGAGGCTCGTACAAGGGGATAACACCATCTTTCTGACTCAACCAAGGAACCAGAGCCCATTCCAGGGTATCTTGTATGACTACTTGCGCCTTGAAGGGCCTCCTACATCATCTGCAAGCCAGTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_108425.p1 GENE.S_Transcript_108425~~S_Transcript_108425.p1 ORF type:5prime_partial len:673 (+),score=111.43,Rhamnogal_lyase|PF06045.7|1.4e-86,CBM-like|PF14683.2|5.1e-57,fn3_3|PF14686.2|3.4e-29 S_Transcript_108425:3-2021(+)
NSLFLLILTILFFLIEFFSERQDYFGGKVSAMSFPAVQLEIQDDYVVIDNGILQMKISNPDGIVTKIQFNGIENLLEEKNEEDNRGYWDLNWSEAGSLGTTGFYDRIKGKSFQVIVEDEDMVEVSFTRTWDSSLKGKLVPLNIDKRFIVLQGSSGFYSYAIYEKLKEFPGFNLPQTRITFKLNKDWFHYMAVADNRQRKMPLPDDRSPERCKVLAYPEAVLLTNPIEEEFKGEVDDKYQYSCDNKDILVHGWICTDQATGFWQITPSYEYRSGGPVKQNLTSHVGPTSLSVFLSAHYAGDPLVPKFEDGEPWKKVFGPVFIYCNSLPKESDWHWLWEDAKQQMMIEAQSWPYSFPASEDFPPSYKRGNVNGRLLIKDRYVSDDYIPASGAYVGLALPGPAGSWQADSKGYQFWTRADENGYFRIYGIREGNYNLYAWVPGLIGDYKCDADINITAECDLPMGDLVYEPPRDGPTLWEIGIPDRTAAEFYVPDPNPTFVNRLYVNHPDRFRQYGLWERYAELYPNEDLVYTIGVSDYHKDWFFAQVPRKKENGFVGTTWQIKFKLDKADQNATYKLRLAVASATLAEVQVRVNDPTANRPVFTTGLIGRDNSVARHGIHGLYWLYSVDIQGSRLVQGDNTIFLTQPRNQSPFQGILYDYLRLEGPPTSSASQW*

Click here to download the sequence:
Link to NCBI Protein BLAST