Transcript Information: S_Transcript_108427.p1


Annotated TAIR IDAT1G09910.1
Annotated Gene NameRhamnogalacturonate lyase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:3220151-3224451 | Reverse length=675
E-Value6.3E-100
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.0084262265856
Replicate 23.3573810196218
Replicate 32.0046452264783
Condition 2: 8 Hour
Replicate 10.4635954416768
Replicate 20.29180672138774
Replicate 30.74142078626022
Condition 3: 24 Hour
Replicate 11.9945328404456
Replicate 23.0546876472468
Replicate 32.4125433778807


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_108427.p1 GENE.S_Transcript_108427~~S_Transcript_108427.p1 ORF type:5prime_partial len:230 (-),score=35.61,Rhamnogal_lyase|PF06045.7|9.7e-92 S_Transcript_108427:171-860(-)
AATGGAGGTGGAAGTTCAGGGCAGCCAACTGTTTCACCTGTTCAACTCCAAATTCTTGATCGTTATGTAGTATTAGATAATGGTTTACTGCAAGTGACACTGTCAAAGCCAGGGGGAATTGTCACTGGAATTAAATATAATGGCATTGACAATTTGCTTGAAGTTCGAAATGGAGAGGACAATAGAGGGTATTGGGATCTTGTTTGGAATGATCCTAGTGCAGGGGGAGCTGGGAAATTCGATGTGATAAAAGGAAGTACTTTTGAAGTTATAATGTCAAATGAAGATCAGGTGGAAGTCTCCTTTTCTAGACGATGGGACTCCTCCTTGAAGGGCCAGTTAGTCCCCTTGAACATTGATAAAAGGTTTATTATGCTTCGTGGCTCATCCGGGTTCTACACCTATGCCATCTATGAGAAATTGAATGACTGGCCGGGGTTCAGCATGGGTGAAACTAGGATCACGTTCAAGCTCAACAAAGACAAGTTTCACTACATGGCTGTCGCGGATAACAGGCAAAGAGAAATGCCTTTGCCTGATGACAGAATGCCTGGAAGATGCCGACCCCTAGCCTACCCCGAAGCTGTTCTTCTCACCAACCCTGTAGAGCAGAACCTCAAAGGAGAAGTATTGTTTTCTTTTTCGTTATCTTACATATTCATAGTAACAATGATCAATTTGGATGGATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_108427.p1 GENE.S_Transcript_108427~~S_Transcript_108427.p1 ORF type:5prime_partial len:230 (-),score=35.61,Rhamnogal_lyase|PF06045.7|9.7e-92 S_Transcript_108427:171-860(-)
NGGGSSGQPTVSPVQLQILDRYVVLDNGLLQVTLSKPGGIVTGIKYNGIDNLLEVRNGEDNRGYWDLVWNDPSAGGAGKFDVIKGSTFEVIMSNEDQVEVSFSRRWDSSLKGQLVPLNIDKRFIMLRGSSGFYTYAIYEKLNDWPGFSMGETRITFKLNKDKFHYMAVADNRQREMPLPDDRMPGRCRPLAYPEAVLLTNPVEQNLKGEVLFSFSLSYIFIVTMINLDG*

Click here to download the sequence:
Link to NCBI Protein BLAST