Transcript Information: S_Transcript_108792.p1


Annotated TAIR IDAT5G06140.1
Annotated Gene Namesorting nexin 1
Annotated Gene Symbol(s)SNX1, ATSNX1
Annotation TypeOrtholog
Chromosome Positionchr5:1856212-1858752 | Reverse length=402
E-Value1.7E-235
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 131.169569684876
Replicate 228.468115558084
Replicate 325.90220502064
Condition 2: 8 Hour
Replicate 135.824539068732
Replicate 236.361193198563
Replicate 333.745684297712
Condition 3: 24 Hour
Replicate 127.915918108327
Replicate 226.656691531485
Replicate 327.037030230794


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_108792.p1 GENE.S_Transcript_108792~~S_Transcript_108792.p1 ORF type:complete len:403 (+),score=94.25,Vps5|PF09325.6|1.3e-24,PX|PF00787.20|5.1e-24,PX|PF00787.20|3.2e+03 S_Transcript_108792:3179-4387(+)
ATGCAGCAAAACCAGAGAAGTTCGTCAGGTTCATCATCTCAAAGCCCTAGATCCCCTCATTCTCAACCCTTTCTCTCTGTTTCAGTCACTGATCCCGTCAAATTGGGCAATGGCGTCCAAGCTTACATCTCTTACCGGGTCATCACCAAGACCAATTTACCAGATTATCAAGGGCCAGAAAAGATTGTCATCCGACGATACAGCGATTTTGTTTGGCTACGTGATCGTCTTTTTGAGAGATACAAAGGCATTTTCATACCGCCACTTCCCGAGAAAAGCGCTGTTGAGAAATTTCGCTTCAGTGCTGAGTTTATTGAAATGAGACGTCAAGGATTGGATATATTTGTCAACCGAATTGCTTCACATCATGAGCTTCGCCAAAGTGATGATCTGAGGTTGTTCTTGCAGGCAGATGAAGAGACAATGGAGAGAGTAAGGGCTCAGGAGATTAGTATTTTCAAGAGGAGACCAGCTGATTTAATGCAAATCTTCAAGGATGTACAATCTAAAGTAAGTGATGTCGTTTTGGGCAAGGAAAAACCTGTAGAAGAATCTACTCCTGAGTATGAGAAGATGAAACATTATATATTTGAGCTTGAGGACCACTTAGCGGAAGCACAAAAGCATGCTTTTCGCCTCGTAAAGAGGCACAGAGAATTGGGACAATCACTGTCAGATTTTGGTCGGGCAATCAAGCTTTTAGGTGCCTGTGAGGGTGATTCTCTTGGGAAGGCATTTTCTGAGCTTGGCTCAAAGTCAGAGGCCTTGTCAGTCAAGCTTCAAGCAGAGGCTCACCATCTATTGATGAACTTTGAAGAACCATTGAAAGATTATGTTCGTGCTGTGCAGTCTATCAAGGCCACTATAGCGGAGAGAGCTACTGCCTTCAAGCAACATTGCGAGCTATCTGAGACAGTGAGGCTGAAGGAGATAAATCTAGACAAGCTCATGTTGACACGGTCTGAGAAGTTTGGAGAAGCTGAGGCTGAGTATAGGGAGCTAAAAGCAGAGAGCGAGGAAGCAACAAGAAGGTTTGAAACAATTGTTCGGCTAATGAATGAAGAGATGGCATGTTTTCAAGAACAGAAAACGGCAGATATGGGGCTAGCATTCCATGAGTTTGCCAAAGGACAAGCACGTTTGGCCAATAGCATAGCTGAAGCATGGAGAGGCCTGCTTCCAAAGCTTGAAGCCTGCTCGTCATCATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_108792.p1 GENE.S_Transcript_108792~~S_Transcript_108792.p1 ORF type:complete len:403 (+),score=94.25,Vps5|PF09325.6|1.3e-24,PX|PF00787.20|5.1e-24,PX|PF00787.20|3.2e+03 S_Transcript_108792:3179-4387(+)
MQQNQRSSSGSSSQSPRSPHSQPFLSVSVTDPVKLGNGVQAYISYRVITKTNLPDYQGPEKIVIRRYSDFVWLRDRLFERYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDIFVNRIASHHELRQSDDLRLFLQADEETMERVRAQEISIFKRRPADLMQIFKDVQSKVSDVVLGKEKPVEESTPEYEKMKHYIFELEDHLAEAQKHAFRLVKRHRELGQSLSDFGRAIKLLGACEGDSLGKAFSELGSKSEALSVKLQAEAHHLLMNFEEPLKDYVRAVQSIKATIAERATAFKQHCELSETVRLKEINLDKLMLTRSEKFGEAEAEYRELKAESEEATRRFETIVRLMNEEMACFQEQKTADMGLAFHEFAKGQARLANSIAEAWRGLLPKLEACSSS*

Click here to download the sequence:
Link to NCBI Protein BLAST