Transcript Information: S_Transcript_108941.p1


Annotated TAIR IDAT3G18790.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isy1-like splicing (InterPro:IPR009360); Has 1147 Blast hits to 965 proteins in 236 species: Archae - 12; Bacteria - 13; Metazoa - 351; Fungi - 230; Plants - 49; Viruses - 9; Other Eukaryotes - 483 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:6477853-6478755 | Forward length=300
E-Value1.3E-170
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 140.636618652521
Replicate 237.519953499007
Replicate 335.33937453145
Condition 2: 8 Hour
Replicate 142.331538264249
Replicate 238.045539004086
Replicate 335.802965588008
Condition 3: 24 Hour
Replicate 134.729440519478
Replicate 234.402851704216
Replicate 332.773554706049


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_108941.p1 GENE.S_Transcript_108941~~S_Transcript_108941.p1 ORF type:complete len:334 (-),score=86.48,Isy1|PF06246.8|1e-90 S_Transcript_108941:1011-1925(-)
ATGGCGCGAAACGAGGAGAAAGCCCAGTCTATGCTGAATCGGTTCATAACGATGAAGCAAGAGGAGCAGAAGAAGCCCAAAGAGCGTCGTCCTTACTTAGCTTCCGAGTGCCGTGACCTCGCCGAAGCCGACAAATGGCGTCAGCAAATCATGCGAGAAATCGGCCGGAAAGTCGCCGAGATCCAAAACGAGGGTTTAGGCGAACACCGTCTTCGAGACCTTAACGACGAGATCAACAAACTCATTCGAGAGAAGTCTCATTGGGAGCGTCGAATTGTGGAGCTTGGTGGCCCTAATTACTCCAAACATTCCGCTAAGATGACCGATTTAGAAGGCAACATTGTCGATGTCCCTAACCCTAGCGGTCGAGGTCCAGGGTACCGGTACTTCGGGGCAGCGAAGAAGTTGTCTGGTGTGAGAGAATTGTTTGAGAAGCCGCCTGAGCTGAGAAAGAGACGAACCAGATACGATATTTATAAGAGGATTGATGCCAGTTATTATGGTTACAGGGATGATGAGGACGGGGTTTTGGTGAAGCTGGAGGGTCCTGCCGAGGAGAAGATGCGGGCTGAGGCGTTGGGGGAGTGGAATTTGATGGAGGAGATTAAGAATGAGGCTAGGAAGGCTGTTAAGAGCGGTGAGGTGGCAAGCGTGACAAGTGTGGATGTGAAGGGGATTTTGTTTGAGGAGGAAGAGGAGGTGGTGGAGGAAGAAAGGAGGAAAGAGAAGGAGAGGGAAGAAGAGGAGGATTTGAAGAGGAAGGAGTTTGTTGTGCACGTGCCATTGCCTGATGAGAAAGAGATTGAGAGGATGGTTGTTGAGAAAAAGAAGATGGAGCTCTTGAGTAAGTATACGAGTGAGAATTTGCTCGAGGAGCAGTTGGAGGCTAAGGCTTTGTTGAATATCCAGAGGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_108941.p1 GENE.S_Transcript_108941~~S_Transcript_108941.p1 ORF type:complete len:334 (-),score=86.48,Isy1|PF06246.8|1e-90 S_Transcript_108941:1011-1925(-)
MARNEEKAQSMLNRFITMKQEEQKKPKERRPYLASECRDLAEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKSHWERRIVELGGPNYSKHSAKMTDLEGNIVDVPNPSGRGPGYRYFGAAKKLSGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLVKLEGPAEEKMRAEALGEWNLMEEIKNEARKAVKSGEVASVTSVDVKGILFEEEEEVVEEERRKEKEREEEEDLKRKEFVVHVPLPDEKEIERMVVEKKKMELLSKYTSENLLEEQLEAKALLNIQR*

Click here to download the sequence:
Link to NCBI Protein BLAST