Transcript Information: S_Transcript_109188.p1


Annotated TAIR IDAT3G51690.1
Annotated Gene NamePIF1 helicase
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:19176731-19178107 | Reverse length=331
E-Value1E-57
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.9483791455885
Replicate 20.51458401300326
Replicate 31.0216092874298
Condition 2: 8 Hour
Replicate 11.865194488379
Replicate 22.8046340860299
Replicate 34.1015916674308
Condition 3: 24 Hour
Replicate 10.12737541393932
Replicate 20.66075252409176
Replicate 32.3530770290487


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_109188.p1 GENE.S_Transcript_109188~~S_Transcript_109188.p1 ORF type:5prime_partial len:343 (+),score=32.23,PIF1|PF05970.10|2.8e-61,Herpes_Helicase|PF02689.10|5.9e+02,Herpes_Helicase|PF02689.10|1.5e-05 S_Transcript_109188:3-1031(+)
CAAGACCGAGCCGAACCGACTCCGACTTTGGCAAATTTAAGGCAACGACTTGGCTCGGCTCGGCTTGTATCCGACCGAGCTGAGCCAATCAATTCTTCCCTCATTTGGAATTATTGTAAAGTAATGCGGCTCACCGTAAATATGCGACTTCAGTCGTCAAGCTCACCTATTCATGTCAATGCTATACAAGATTTTGCAGATTGGATATTAAAGGTTGGGAATGGTGATGTCGGGGAAGATGAAGATGGCATTGCTGAATTCGAGGTTCCTAATGATATAGTGATAAATTCCAATGTGAAAAATCCGATTGCTACGATTGTTGAGAATACCTATCCAAATTTACAGGACATGTTGTATGATTCTTTGTACTTTCAGCAAAGGGCAATATTAGGACCGACTAATGAAGTTGTCGAGGATATTAACTCATACATGTTGGATTTATTACCCGGTGAAAAGAAAGTATATAGAAGCTATGATTCAGTTTGTCCTGAGGATATGCCAAATGCTGCAGATGATGAGGTATATTCAGTTGAATATTTGAATAGTTTGAAGTTTTCTGGGTTGCCGAACCATGAAATTACATTGAAAGTTGGCGCTCCAATCATGTTGCTAAGAAATATTGATTGCTCAGGTGGTTTATGTAATGGAACAAGATTACGTATAACCAGGTTGGGTAATAATGTTATTGAAGCAGATGTACTCACTGGCAGTCGAATTGGAACCAAGGTATTCATACCTCGATTTTCATTAACGCCATCTGATACACATTTACCGTTCAAGTTTAGTCGGCGACAATTTCCTGTCAGGATATGTTTCGCTATGACTATTAATAAAAGTCAAGGACAGTCTCTTGAACGTGCTGGTGTTTATTTACCTTCACCCGTTTTCACACATGGCCAGCTTTATGTTGCCATTTCACGTGTAACAAATAGAGAAGGGTTGAAATTTCTCATATTAGATGAAAATGGCAGACCATGTAATACAACACTGAATGTAGTGTACAAAGAGATATTCAAAAATATCTCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_109188.p1 GENE.S_Transcript_109188~~S_Transcript_109188.p1 ORF type:5prime_partial len:343 (+),score=32.23,PIF1|PF05970.10|2.8e-61,Herpes_Helicase|PF02689.10|5.9e+02,Herpes_Helicase|PF02689.10|1.5e-05 S_Transcript_109188:3-1031(+)
QDRAEPTPTLANLRQRLGSARLVSDRAEPINSSLIWNYCKVMRLTVNMRLQSSSSPIHVNAIQDFADWILKVGNGDVGEDEDGIAEFEVPNDIVINSNVKNPIATIVENTYPNLQDMLYDSLYFQQRAILGPTNEVVEDINSYMLDLLPGEKKVYRSYDSVCPEDMPNAADDEVYSVEYLNSLKFSGLPNHEITLKVGAPIMLLRNIDCSGGLCNGTRLRITRLGNNVIEADVLTGSRIGTKVFIPRFSLTPSDTHLPFKFSRRQFPVRICFAMTINKSQGQSLERAGVYLPSPVFTHGQLYVAISRVTNREGLKFLILDENGRPCNTTLNVVYKEIFKNIS*

Click here to download the sequence:
Link to NCBI Protein BLAST