Transcript Information: S_Transcript_109592.p1


Annotated TAIR IDAT3G11130.1
Annotated Gene NameClathrin, heavy chain
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:3482575-3491667 | Reverse length=1705
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.2482698552163
Replicate 210.524361726815
Replicate 39.3702845443387
Condition 2: 8 Hour
Replicate 115.89470085749
Replicate 217.313865469006
Replicate 320.812740642876
Condition 3: 24 Hour
Replicate 19.1721374159265
Replicate 29.0936784337394
Replicate 310.182812958587


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_109592.p1 GENE.S_Transcript_109592~~S_Transcript_109592.p1 ORF type:3prime_partial len:805 (+),score=166.33,Clathrin|PF00637.16|1.9e+03,Clathrin|PF00637.16|9.2e-22,Clathrin|PF00637.16|7.6e-17,Clathrin_propel|PF01394.16|5.8e-07,Clathrin_propel|PF01394.16|0.02,Clathrin_propel|PF01394.16|6.7e-10,Clathrin_propel|PF01394.16|0.0036,Clathrin_propel|PF01394.16|1.2,Clathrin_propel|PF01394.16|0.24,Clathrin_H_link|PF13838.2|9.4e-31,Clathrin-link|PF09268.6|7.7e+03,Clathrin-link|PF09268.6|2.7e-09,Clathrin-link|PF09268.6|9.3e+02 S_Transcript_109592:344-2755(+)
ATGGCGGCGGCAAATGCGCCGATTGTCATGAAAGAAGCTCTCACGTTGCCTAGCATTGGAATTAATCAACAATTCATCACATTCAACAATGTGACGATGGAATCAGAGAAGTACATATGTGTACGAGAAACGTCGCCGCAGAATAGTGTGGTTATTGTTGATATGAGCATGCCAATGCAGCCGTTGCGAAGGCCTATTACTGCGGATTCAGCTCTTATGAATCCAAATACTCGAATCCTGGCTTTGAAAGCTCAACTTCCTGGTACTACCCAGGATCACTTGCAGATATTCAACATTGAAACGAAAACAAAGGTGAAGTCACACCAGATGTCAGAGCAGGTTGTCTTTTGGAAGTGGATATCTCCGAAAATGCTTGGATTAGTCACACAGACATCAGTTTATCATTGGTCGATTGAAGGCGATTCGCAACCTGTGAAAATATTTGAAAGGACAGCTAATATGGCAAACAATCAAATAATCAACTATAAATGTAACTTAGCTGAAAAGTGGTTGGTCTTGATTGGTATTGCACCTGGCTCACCTGAGAAGCCCCAACTCGTTAAAGGAAATATGCAACTCTATTCTGTGGACCAACAGCGTAGTCAAGCTCTTGAGGCTCATGCCGCATGTTTTGCCTCCTTTAAAGTCCAAGGGAATGAGAATCCCTCTACTCTTATTGTGTTTGCTACCAAAACCATGAACGCTGGTCAGGTTGTTTCAAAGTTGCATGTTATTGAACTTGGGGCACAACCAGGAAAGCCAGGTTTCACGAAGAAACAAGCTGATCTATTTTTCCCACCAGATTTTGCTGATGACTTTCCAGTTGGAATGCAGGTGTCTCAAAAGTATGGTTTGATATATGTTATTACCAAGCTTGGACTTCTATTTGTATATGATCTTGAGACTGCCAGTGCTGTATACCGCAATAGAATTAGTCCAGATCCAATATTTTTGACATCAGAAGCTTCATCAGCTGGAGGTTTCTATGCCATTAATAGACGGGGACAGGTTCTACTTGCGACTGTCAATGAAACTACTATTGTGCCTTTTGTCAGTGGCCAGTTGAACAATTTGGAGCTCGCTATTAATCTTGCCAAAAGGGGAAATCTTCCTGGTGCAGATAATTTGGTTGTCCAACGTTTCCAAGAATTGTTTGCACAAACAAAGTATAAGGAAGCTGCTGAGCTTGCTGCTGAATCTCCACAAGGAATTTTGCGCACTCCTGATACAGTAGCCAAATTTCAGAGTGTCCCTGTTCAAGCTGGGCAGACACCGCCTCTTTTGCAGTACTTTGGGACACTTTTAACGAGAGGAAAGCTCAATGCATATGAGTCATTGGAACTATCACGCCTTGTTGTCAATCAGAACAAGAAAAATCTACTGGAGAATTGGCTGGCAGAGGACAAACTGGAGTGCAGTGAGGAACTTGGTGACCTAGTGAAGACTGTGGATAATGACCTCGCCTTAAAGATATATATTAAAGCCAGAGCAACCCCTAAGGTTGTTGCTGCTTTTGCTGAACGCAGGGAGTTTGACAAAATTCTTGTGTACTCAAAGCAGGTTGGTTACACACCAGATTACTTGTTCCTTCTCCAAACTATTCTTCGGACAGATCCTCAGGGAGCTGTTAATTTTTCCCTGATGATGTCCCAAATGGAAGGAGGCTGTCCAATTGATTATAACACAATAACTGATCTCTTTCTTCAGAGGAATTTGATTCGTGAGGCAACAGCATTTCTCTTAGATGTTTTGAAGCCAAATTTGCCTGAACATGGCTATTTGCAAACAAAGGTGTTGGAAGTCAATCTTGTTACCTTTCCCAATGTGGCAGATGCCATTTTAGCAAATGGAATGTTCGGTCACTATGATCGTTCTAGAGTCGCTCAACTTTGTGAGAAAGCTGGTCTTTACATACAAGCTCTTCGGCATTACACTGACTTACCAGATATAAAACGTGTCATTGTGAACACTCATGCAATAGAACCACAGGCTCTTGTTGAGTTCTTTGGTACTCTTTCACGGGAATGGGCATTGGAGTGCATGAAGGATCTTTTGCTTGTTAATCTCAGAGGCAACCTTCAGATAATTGTTCAGACGGCCAAGGAGTACTGTGAGCAGCTGGGTGTTGATGCATGTATTAAACTCTTTGAGCAATTCAAGTCATATGAAGGCTTGTACTTCTTCCTTGGATCATATTTGAGCTCCAGTGAGGATCCTGACATTCACTTCAAATACATTGAAGCAGCTGCTAAAACGGGGCAGCTGAAAGAAGTGGAACGAGTGACCCGAGAATCCAATTTCTATGATGCTGAAAAGACAAAACATTTTTTGATGGAAGCCAAGCTTCCTGATGCACGTCCTCTTATCAATGTCTGTGATCGATTTGGTTTTGTTCCAGATCTCACACACTAC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_109592.p1 GENE.S_Transcript_109592~~S_Transcript_109592.p1 ORF type:3prime_partial len:805 (+),score=166.33,Clathrin|PF00637.16|1.9e+03,Clathrin|PF00637.16|9.2e-22,Clathrin|PF00637.16|7.6e-17,Clathrin_propel|PF01394.16|5.8e-07,Clathrin_propel|PF01394.16|0.02,Clathrin_propel|PF01394.16|6.7e-10,Clathrin_propel|PF01394.16|0.0036,Clathrin_propel|PF01394.16|1.2,Clathrin_propel|PF01394.16|0.24,Clathrin_H_link|PF13838.2|9.4e-31,Clathrin-link|PF09268.6|7.7e+03,Clathrin-link|PF09268.6|2.7e-09,Clathrin-link|PF09268.6|9.3e+02 S_Transcript_109592:344-2755(+)
MAAANAPIVMKEALTLPSIGINQQFITFNNVTMESEKYICVRETSPQNSVVIVDMSMPMQPLRRPITADSALMNPNTRILALKAQLPGTTQDHLQIFNIETKTKVKSHQMSEQVVFWKWISPKMLGLVTQTSVYHWSIEGDSQPVKIFERTANMANNQIINYKCNLAEKWLVLIGIAPGSPEKPQLVKGNMQLYSVDQQRSQALEAHAACFASFKVQGNENPSTLIVFATKTMNAGQVVSKLHVIELGAQPGKPGFTKKQADLFFPPDFADDFPVGMQVSQKYGLIYVITKLGLLFVYDLETASAVYRNRISPDPIFLTSEASSAGGFYAINRRGQVLLATVNETTIVPFVSGQLNNLELAINLAKRGNLPGADNLVVQRFQELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAYESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILVYSKQVGYTPDYLFLLQTILRTDPQGAVNFSLMMSQMEGGCPIDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGYLQTKVLEVNLVTFPNVADAILANGMFGHYDRSRVAQLCEKAGLYIQALRHYTDLPDIKRVIVNTHAIEPQALVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVDACIKLFEQFKSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQLKEVERVTRESNFYDAEKTKHFLMEAKLPDARPLINVCDRFGFVPDLTHY

Click here to download the sequence:
Link to NCBI Protein BLAST