Transcript Information: S_Transcript_109786.p1


Annotated TAIR IDAT5G64400.2
Annotated Gene NameBEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR:AT5G09570.1); Has 127 Blast hits to 125 proteins in 40 species: Archae - 0; Bacteria - 9; Metazoa - 16; Fungi - 2; Plants - 64; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:25748922-25749947 | Forward length=162
E-Value4E-12
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.5484001646907
Replicate 24.1674158053083
Replicate 32.0491928981778
Condition 2: 8 Hour
Replicate 12.3694878130148
Replicate 21.4914565759818
Replicate 31.7763206337485
Condition 3: 24 Hour
Replicate 11.6990464937129
Replicate 23.9032119937043
Replicate 31.8215920959251


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_109786.p1 GENE.S_Transcript_109786~~S_Transcript_109786.p1 ORF type:5prime_partial len:180 (+),score=37.94 S_Transcript_109786:3-542(+)
CGGGCTTCTTGTCAAAGCTACAGTTGCCGTTCCCATTTTCTCTCTCTATCTGTCGAACTTTCTTTCTGGCCTTGCGTTTTACATCCTCAATTCCTCAAAGCCGCCATGCCTCGCCGCAGCTCTGGAGGAAGATCTGCTCCCCGTGCAGCTCCCCGTCCTGCTGCTCGTAACCCACCTCCACAGCCAGTTAGCCATGCTCCTCCTCCAGCACCTGTTCCAGCTTCCAGTGGTGGCTCCATGCTTGGAGGTATTGGTTCCACTATAGCACAAGGTATGGCTTTTGGAACCGGAAGTGCTGTGGCACACAGGGCTGTGGATGCTGTCATGGGTCCACGTACAATCCAACATGAGACTGTTGTCACTGAGGCTGCTAGTGCTGCACCAACCCCTGTCTCTAGCAGCGTTGGGGATGCATGTGGAATCCACAACAAAGCCTTCCAAGATTTCTTTAGGTTGGCTGACATTGGAACGAGGTGGAAAATAAACTGTCTGGATGTCTTGATAGTACTTGTTATGTTTCCATCAGAATGTTTGGCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_109786.p1 GENE.S_Transcript_109786~~S_Transcript_109786.p1 ORF type:5prime_partial len:180 (+),score=37.94 S_Transcript_109786:3-542(+)
RASCQSYSCRSHFLSLSVELSFWPCVLHPQFLKAAMPRRSSGGRSAPRAAPRPAARNPPPQPVSHAPPPAPVPASSGGSMLGGIGSTIAQGMAFGTGSAVAHRAVDAVMGPRTIQHETVVTEAASAAPTPVSSSVGDACGIHNKAFQDFFRLADIGTRWKINCLDVLIVLVMFPSECLA*

Click here to download the sequence:
Link to NCBI Protein BLAST