Transcript Information: S_Transcript_109789.p2


Annotated TAIR IDAT5G64400.2
Annotated Gene NameBEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR:AT5G09570.1); Has 127 Blast hits to 125 proteins in 40 species: Archae - 0; Bacteria - 9; Metazoa - 16; Fungi - 2; Plants - 64; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:25748922-25749947 | Forward length=162
E-Value1.1E-47
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.175905761367
Replicate 21.248837144765
Replicate 30.92793640672204
Condition 2: 8 Hour
Replicate 11.8777073235211
Replicate 20
Replicate 30.80437160773515
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_109789.p2 GENE.S_Transcript_109789~~S_Transcript_109789.p2 ORF type:5prime_partial len:159 (+),score=37.22 S_Transcript_109789:3-479(+)
CGGGCTTCTTGTCAAAGCTACAGTTGCCGTTCCCATTTTCTCTCTCTATCTGTCGAACTTTCTTTCTGGCCTTGCGTTTTACATCCTCAATTCCTCAAAGCCGCCATGCCTCGCCGCAGCTCTGGAGGAAGATCTGCTCCCCGTGCAGCTCCCCGTCCTGCTGCTCGTAACCCACCTCCACAGCCAGTTAGCCATGCTCCTCCTCCAGCACCTGTTCCAGCTTCCAGTGGTGGCTCCATGCTTGGAGGTATTGGTTCCACTATAGCACAAGGTATGGCTTTTGGAACCGGAAGTGCTGTGGCACACAGGGCTGTGGATGCTGTCATGGGTCCACGTACAATCCAACATGAGACTGTTGTCACTGAGGCTGCTAGTGCTGCACCAACCCCTGTCTCTAGCAGCGTTGGGGATGCATGTGGAATCCACAACAAAGCCTTCCAAGATGTAAGTGGTTTCTTTTCTGTAGTCAAAAGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_109789.p2 GENE.S_Transcript_109789~~S_Transcript_109789.p2 ORF type:5prime_partial len:159 (+),score=37.22 S_Transcript_109789:3-479(+)
RASCQSYSCRSHFLSLSVELSFWPCVLHPQFLKAAMPRRSSGGRSAPRAAPRPAARNPPPQPVSHAPPPAPVPASSGGSMLGGIGSTIAQGMAFGTGSAVAHRAVDAVMGPRTIQHETVVTEAASAAPTPVSSSVGDACGIHNKAFQDVSGFFSVVKS*

Click here to download the sequence:
Link to NCBI Protein BLAST