Transcript Information: S_Transcript_109995.p1


Annotated TAIR IDAT1G43980.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:16687637-16689502 | Reverse length=621
E-Value1.9E-188
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.5225593587849
Replicate 23.5202871173918
Replicate 33.3214406216911
Condition 2: 8 Hour
Replicate 13.7058340203549
Replicate 24.0643958824148
Replicate 33.2664095066085
Condition 3: 24 Hour
Replicate 13.3819882813242
Replicate 22.5778743025229
Replicate 32.7094771240883


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_109995.p1 GENE.S_Transcript_109995~~S_Transcript_109995.p1 ORF type:complete len:633 (+),score=89.67,PPR_2|PF13041.2|0.0011,PPR_2|PF13041.2|2.3e-11,PPR_2|PF13041.2|6.4,PPR_2|PF13041.2|3.8e-08,PPR_2|PF13041.2|24,PPR_2|PF13041.2|3.3e-07,PPR_2|PF13041.2|0.92,PPR_2|PF13041.2|1.1e-07,PPR_2|PF13041.2|61,PPR_2|PF13041.2|2.1e+03,PPR|PF01535.16|0.0012,PPR|PF01535.16|0.0013,PPR|PF01535.16|0.25,PPR|PF01535.16|0.00017,PPR|PF01535.16|1.1e+02,PPR|PF01535.16|1.1,PPR|PF01535.16|0.0017,PPR|PF01535.16|0.013,PPR|PF01535.16|2.1e-06,PPR|PF01535.16|88,PPR|PF01535.16|0.43,PPR|PF01535.16|5.5e+03,PPR|PF01535.16|6e+03,PPR_1|PF12854.3|3.5e+02,PPR_1|PF12854.3|1.7,PPR_1|PF12854.3|74,PPR_1|PF12854.3|5.2,PPR_1|PF12854.3|0.012,PPR_1|PF12854.3|1.6e+02,PPR_1|PF12854.3|1.4e+02,PPR_1|PF12854.3|5.9e+02,PPR_1|PF12854.3|86,PPR_1|PF12854.3|2.1,PPR_1|PF12854.3|0.00053,PPR_1|PF12854.3|3.5e+03,PPR_1|PF12854.3|0.76,PPR_3|PF13812.2|4e+02,PPR_3|PF13812.2|1.2,PPR_3|PF13812.2|36,PPR_3|PF13812.2|2.1e+02,PPR_3|PF13812.2|5,PPR_3|PF13812.2|4.8e+03,PPR_3|PF13812.2|2.1e+03,PPR_3|PF13812.2|2.8e+03,PPR_3|PF13812.2|16,PPR_3|PF13812.2|0.02,PPR_3|PF13812.2|34,PPR_3|PF13812.2|7.9,PPR_3|PF13812.2|4.5e+02 S_Transcript_109995:308-2206(+)
ATGTACACTTTGCCGAAACAAATTCGTAGCATTCCTAGAACGCTTACTTTCTACTCTTATCTGATTGACCATTGCCTTACATCAAAGTCGCTGAATCTAACCAAAGTCATCCATGCCCAGTTGATAAAAGTTGGATTCCATAGGCATACTTTTCTTGGTAATCGCTGTCTTGAACTTTATACCCAGTTTCAGTGTATTAATGATATCTTGAAAGCATTTTATGACGTGGCTAAGAAGAATAATATATCTTGGAATGTTTGCTTGAAAGGGCTGCTGAATTGTGGCCACCATGAGATGGCACAATGTCTGTTCCAGGAAATGCCTGAACGTGATGTTGTGAGTTGGAATTCTATGATCTCATGGCATGCTTCTGGTGGGCATTGTGATTATGTGTGGGGATTATTCAGGGATATGTTATACGTCGGAGTGAAACCAAGTGCGCACACTTATTCGATTCTTTTCTCTGAGGTGTCTGATTCTCTCCATGGCAAGCAACTTCATGGTAGCTTGCTAAGAAGTGGTTTATTCAGGTCAAATGTGGTGCTGGGAAATTCCTTAATTGATATGTATGGTAATCTTGGCATTATAGACTATGCATTTGGTGTGTTTTTGATGATGGAACAGCTGGATGTAATATCTTGGAATTCATTGATTATGGGATGTTGTAGAACTGGACACGGAGAACTAGCATTATACCAATTTTCTTTGATGAGGTTCTTGGGATATTTACCAGATGAGTTTACATGCTCTTCGGTGATCACTTGTTGTACTAACTTGTGGAGTTTGGAGAGGGGTAAGCAGATTTTTACTCTCTGTATTAAGGCTGGCTTTCTTTCTAACTCCATTGTCTCAAGTGCCATCATTGATTTATTCTCCAAATGCAATCGATTGGAGCATTCTGTTCAACTCTTTGAAGAAGTTCAGATACGGGATTCTAAAGTTTGCAATTCCATGATTTCAGGCTATTCACAGCATGGTATCGGAGAGATTGCTCTCCACATTTTTGTGCTTATGTTGAGGGAAGATATTAGACCTACTGAGTTCACTCTTAGCAGTGTTCTGACCTCTCTTTGTTCTGTGCCTATGGAGCAGGGAACTCAAATCCATTCTTATGCTGTAAAATTAGGTTTTGAGATGGATGATGTTGTTGCTAGCTCACTTCTTCATATGTACACGAAGTTTGGGTTCATTGATGATGCCATGAAAATCTTTTCAAGTATGGCTGTACGAGATTTGATATCCTGGAATACAATGATCTTTGGTTTGACTCACAATGGTAGACTGGTTGAGGCCATCGAGACCTTCAAGGAACTACATAAGAGTGGTCTGCCACCTGATCGAATCTCACTGGATGCTGTTCTGTTAGCTTGTAGCTATGGAGGGTTTGTTGATGAAGCAAGGACTATACTTTTGGGAATGAAGGAGCATTATGGGTTTACACCCTGCTGTGAGCATATTACTAGTTTTGTGGACTTGTTGTGCCGAGCCGGTAGGTTAAATGAAGTTCTGGAAATTACTAAGAGGATGGCTTATGAAACTAATACTACAATTCAGAGATCACTGCTTCATGCCTGTGTTGTTTATGGAGATGTGACACTTGCTGAGCTAGTAGCACATAGATTGATGGAGTTGGAACCTCAATTATCTCTACCTTACCTGATTTTGGCTCGTATATATGAGATGAGGGGTCAATGGGAGGACTCAGTTCGAGTAAGGGAAGCAGTGAGGAGGAATATAGTACTGAAGGAAACTACAGTATATACTTGGATTGGAATAAAAAGTAGTGTATATACTTTTATGGAAGAAGAGATGCAGCATCATGTAGACAACAGAACATACTCAGTTCTCAGATTATTGACCTGGGAGAAAGATGAAACCATATGCATGGTAGCAGATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_109995.p1 GENE.S_Transcript_109995~~S_Transcript_109995.p1 ORF type:complete len:633 (+),score=89.67,PPR_2|PF13041.2|0.0011,PPR_2|PF13041.2|2.3e-11,PPR_2|PF13041.2|6.4,PPR_2|PF13041.2|3.8e-08,PPR_2|PF13041.2|24,PPR_2|PF13041.2|3.3e-07,PPR_2|PF13041.2|0.92,PPR_2|PF13041.2|1.1e-07,PPR_2|PF13041.2|61,PPR_2|PF13041.2|2.1e+03,PPR|PF01535.16|0.0012,PPR|PF01535.16|0.0013,PPR|PF01535.16|0.25,PPR|PF01535.16|0.00017,PPR|PF01535.16|1.1e+02,PPR|PF01535.16|1.1,PPR|PF01535.16|0.0017,PPR|PF01535.16|0.013,PPR|PF01535.16|2.1e-06,PPR|PF01535.16|88,PPR|PF01535.16|0.43,PPR|PF01535.16|5.5e+03,PPR|PF01535.16|6e+03,PPR_1|PF12854.3|3.5e+02,PPR_1|PF12854.3|1.7,PPR_1|PF12854.3|74,PPR_1|PF12854.3|5.2,PPR_1|PF12854.3|0.012,PPR_1|PF12854.3|1.6e+02,PPR_1|PF12854.3|1.4e+02,PPR_1|PF12854.3|5.9e+02,PPR_1|PF12854.3|86,PPR_1|PF12854.3|2.1,PPR_1|PF12854.3|0.00053,PPR_1|PF12854.3|3.5e+03,PPR_1|PF12854.3|0.76,PPR_3|PF13812.2|4e+02,PPR_3|PF13812.2|1.2,PPR_3|PF13812.2|36,PPR_3|PF13812.2|2.1e+02,PPR_3|PF13812.2|5,PPR_3|PF13812.2|4.8e+03,PPR_3|PF13812.2|2.1e+03,PPR_3|PF13812.2|2.8e+03,PPR_3|PF13812.2|16,PPR_3|PF13812.2|0.02,PPR_3|PF13812.2|34,PPR_3|PF13812.2|7.9,PPR_3|PF13812.2|4.5e+02 S_Transcript_109995:308-2206(+)
MYTLPKQIRSIPRTLTFYSYLIDHCLTSKSLNLTKVIHAQLIKVGFHRHTFLGNRCLELYTQFQCINDILKAFYDVAKKNNISWNVCLKGLLNCGHHEMAQCLFQEMPERDVVSWNSMISWHASGGHCDYVWGLFRDMLYVGVKPSAHTYSILFSEVSDSLHGKQLHGSLLRSGLFRSNVVLGNSLIDMYGNLGIIDYAFGVFLMMEQLDVISWNSLIMGCCRTGHGELALYQFSLMRFLGYLPDEFTCSSVITCCTNLWSLERGKQIFTLCIKAGFLSNSIVSSAIIDLFSKCNRLEHSVQLFEEVQIRDSKVCNSMISGYSQHGIGEIALHIFVLMLREDIRPTEFTLSSVLTSLCSVPMEQGTQIHSYAVKLGFEMDDVVASSLLHMYTKFGFIDDAMKIFSSMAVRDLISWNTMIFGLTHNGRLVEAIETFKELHKSGLPPDRISLDAVLLACSYGGFVDEARTILLGMKEHYGFTPCCEHITSFVDLLCRAGRLNEVLEITKRMAYETNTTIQRSLLHACVVYGDVTLAELVAHRLMELEPQLSLPYLILARIYEMRGQWEDSVRVREAVRRNIVLKETTVYTWIGIKSSVYTFMEEEMQHHVDNRTYSVLRLLTWEKDETICMVAD*

Click here to download the sequence:
Link to NCBI Protein BLAST