Transcript Information: S_Transcript_110161.p1


Annotated TAIR IDAT5G50390.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:20520789-20522980 | Reverse length=701
E-Value2.3E-306
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.8234895088951
Replicate 24.5192627258636
Replicate 33.2792916222618
Condition 2: 8 Hour
Replicate 16.430985415693
Replicate 25.3781542249129
Replicate 35.4881485298743
Condition 3: 24 Hour
Replicate 14.8164394609418
Replicate 23.6429739802664
Replicate 33.9106726033537


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_110161.p1 GENE.S_Transcript_110161~~S_Transcript_110161.p1 ORF type:complete len:703 (+),score=111.89,PPR_2|PF13041.2|0.18,PPR_2|PF13041.2|14,PPR_2|PF13041.2|0.66,PPR_2|PF13041.2|8.6e-05,PPR_2|PF13041.2|0.24,PPR_2|PF13041.2|2.4e-11,PPR_2|PF13041.2|0.13,PPR_2|PF13041.2|3.1e-12,PPR_2|PF13041.2|0.7,PPR_2|PF13041.2|3.4,PPR_2|PF13041.2|16,PPR|PF01535.16|1e+02,PPR|PF01535.16|93,PPR|PF01535.16|0.66,PPR|PF01535.16|0.0068,PPR|PF01535.16|0.0016,PPR|PF01535.16|1.3e-06,PPR|PF01535.16|5.8,PPR|PF01535.16|0.0027,PPR|PF01535.16|4.8e-09,PPR|PF01535.16|0.45,PPR|PF01535.16|0.7,PPR|PF01535.16|0.18,PPR|PF01535.16|6.1e+03,DYW_deaminase|PF14432.2|6.7e+03,DYW_deaminase|PF14432.2|1.7e-35,PPR_1|PF12854.3|3e+03,PPR_1|PF12854.3|6.3e+03,PPR_1|PF12854.3|22,PPR_1|PF12854.3|0.25,PPR_1|PF12854.3|2.2e+03,PPR_1|PF12854.3|0.059,PPR_1|PF12854.3|0.11,PPR_1|PF12854.3|39,PPR_1|PF12854.3|0.092,PPR_1|PF12854.3|1.3e-05,PPR_1|PF12854.3|13,PPR_1|PF12854.3|0.21,PPR_1|PF12854.3|5.9e+03,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|21,PPR_3|PF13812.2|3.5,PPR_3|PF13812.2|36,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.045,PPR_3|PF13812.2|1.2,PPR_3|PF13812.2|4.2e+02,PPR_3|PF13812.2|0.031,PPR_3|PF13812.2|0.0004,PPR_3|PF13812.2|0.68,PPR_3|PF13812.2|11,PPR_3|PF13812.2|5.1e+03,PPR_3|PF13812.2|1.5e+03 S_Transcript_110161:275-2383(+)
ATGGACCTTCCATCATACATATATCAGAGTATTTCTGAAGGACAGATCAAAGATACTGTTATATTAACCTCACCATGCTCTTCTGATTTGAACTCTTTTTTCTTTTCCGGGTCTAGATTTCGGATCACTGAAAGAAAATGGAGAATCCCATTTTCCAAAATTAATTTTTCTTTGCTTGAACAGAATCTAAGGCCCAAACCCAAGCCCAAACCTTCGAAATTCCAAGTGGGTGGAGAGGAAAAACCAAAATCTAAGGAAACCCGGATGCAAAACCAGACCTTTAAGCTTTGTGATCAAATTGAGAAACTTGTTTTTCACAAAAGGTACCAAGAAGCTCTTGAATTGTTTGAGATTTTGGAGATTGAGGGTGGCCATGAAGTTAGTAATAGCACTTATGATGCACTTGTGAATGCTTGTATTGGGTTGAGATCGATTCGAGGGGTTAAAAGAGTTTGTAATTATATGGTTAACAGTGGGTTTGAGCCAGATCAATATATGTGCAATCGGGTTTTGCTTATGCATGTAAAGTGTGGGATGTTGTTTGATGCACGTAAGTCGTTTGATGAAATGCCTCAAAGAAACTTGGTTTCATGGAATACGATGATAGCTGGTTTAGTGGATGTAGGGGCTTTTGTTGAGGCATTTGAGCTGTTTCTTACAACGTGGATAGAGTTTTTGGATGCTGATTCGCGAACTTTTGCTACCATGATACGAGCAACTGCGGGGTTGGGGTTGATTTATCCTGGAAGGCAGTTGCATTCATGTGTTGTAAAGATGGGTGTTTGTGATGATATTTTTGTTGCGTGTGCATTGATTGACATGTATAGTAAGTGTGGGAGCATCGACGATGCTCAGTTTGTTTTTGATGAGATGCCTGAAAAGACCACTGTTGGTTGGAACACGATTATTGCTGGTTATGCGCTTCATGGTTACAGTGAGGAAGCTTTGAGCATGTATTATGAAATGCAGGATGCTGGAGTGCCGATGGACCATTTTACTTTTTCGATAGTTGTTAGAATATGTGCTAGGTTGGGCTCTCTTGAACATGCAAAACAAGCTCATGCAGGTCTAGTTCGTAATGGTTTTAGCTTGGATACAGTAGCGAACACATCCCTTGTTGACTTGTACAGTAAATGGGGGAGGATAGAGGATGCACAAAATGTTTTCGATAGGATGCCCTACAAGAATCTCATCTCATGGAATGCTTTGATTGCTGGATATGGAAAACATGGACGGGGAGAAGAGGCAGTTGCTTTGTTTGAGCGAATGCTTCATGAAGGAATGAGACCCAATCATGTCACTTTTCTTGCTGTTCTATCTGCCTGTAGTTATTCAGGTCTATCAGATCAGGGTTGGGAAATTTTTGATTCCATGAGTAGGATACATGGTGTCACACCAAGGGCAATGCATTATGCATGCATGATGGAACTATTAGGTCGAGAAGGGCATTTGGATGAAGCTTTGGCTTTGATAAGAGAAGCACCGTTTGAGCCTACAGTGAATATGTGGGCAGCTTTACTCACTGCTTGTAGAGTCCACAAGAACCTGGAGCTGGGGAGATTTGCTGCCGAAAAACTCTATGGAATGGGACCCGAAAAGCTTAGTAACTATGTCATTCTTTTGAATATTTATAACAGCATGGGCAAGCTGGAGGAAGCTGCTTCTGTTATCCATTCCTTGAGGCAAAAAGGGCTGAGAATGTTGCCAGCGTGCACTTGGATTGAGATCAAGAAACAATCATACGCTTTTCTTTCTAATGATAGATCGCATCCCCAGACTAACAAGATATACCAAAGACTGGATGATTTGCTTCTTGAGATCTCAAAACATGGTTATGCTCCTGAAAGGAGATCTTTACTCCCAGATGTGGATGAGAAAGAAGGCCGTCTGCTTTTGCATCACAGTGAAAAGTTAGCAGTCGCGTTTGGGCTGATGAATACGCCTGAATATATGCCGCTGCAACTTGTACAAAGCCATCGAATTTGCAATGACTGTCACAAAGCCCTCAAACTGATATCAAAAGTCACAGGACGGGAGATTGTTGTCCGAGATGGTAGCAGATTTCATCGTTTTAACAAGGGTAGCTGCTCGTGCAGGGATTATTGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_110161.p1 GENE.S_Transcript_110161~~S_Transcript_110161.p1 ORF type:complete len:703 (+),score=111.89,PPR_2|PF13041.2|0.18,PPR_2|PF13041.2|14,PPR_2|PF13041.2|0.66,PPR_2|PF13041.2|8.6e-05,PPR_2|PF13041.2|0.24,PPR_2|PF13041.2|2.4e-11,PPR_2|PF13041.2|0.13,PPR_2|PF13041.2|3.1e-12,PPR_2|PF13041.2|0.7,PPR_2|PF13041.2|3.4,PPR_2|PF13041.2|16,PPR|PF01535.16|1e+02,PPR|PF01535.16|93,PPR|PF01535.16|0.66,PPR|PF01535.16|0.0068,PPR|PF01535.16|0.0016,PPR|PF01535.16|1.3e-06,PPR|PF01535.16|5.8,PPR|PF01535.16|0.0027,PPR|PF01535.16|4.8e-09,PPR|PF01535.16|0.45,PPR|PF01535.16|0.7,PPR|PF01535.16|0.18,PPR|PF01535.16|6.1e+03,DYW_deaminase|PF14432.2|6.7e+03,DYW_deaminase|PF14432.2|1.7e-35,PPR_1|PF12854.3|3e+03,PPR_1|PF12854.3|6.3e+03,PPR_1|PF12854.3|22,PPR_1|PF12854.3|0.25,PPR_1|PF12854.3|2.2e+03,PPR_1|PF12854.3|0.059,PPR_1|PF12854.3|0.11,PPR_1|PF12854.3|39,PPR_1|PF12854.3|0.092,PPR_1|PF12854.3|1.3e-05,PPR_1|PF12854.3|13,PPR_1|PF12854.3|0.21,PPR_1|PF12854.3|5.9e+03,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|21,PPR_3|PF13812.2|3.5,PPR_3|PF13812.2|36,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.045,PPR_3|PF13812.2|1.2,PPR_3|PF13812.2|4.2e+02,PPR_3|PF13812.2|0.031,PPR_3|PF13812.2|0.0004,PPR_3|PF13812.2|0.68,PPR_3|PF13812.2|11,PPR_3|PF13812.2|5.1e+03,PPR_3|PF13812.2|1.5e+03 S_Transcript_110161:275-2383(+)
MDLPSYIYQSISEGQIKDTVILTSPCSSDLNSFFFSGSRFRITERKWRIPFSKINFSLLEQNLRPKPKPKPSKFQVGGEEKPKSKETRMQNQTFKLCDQIEKLVFHKRYQEALELFEILEIEGGHEVSNSTYDALVNACIGLRSIRGVKRVCNYMVNSGFEPDQYMCNRVLLMHVKCGMLFDARKSFDEMPQRNLVSWNTMIAGLVDVGAFVEAFELFLTTWIEFLDADSRTFATMIRATAGLGLIYPGRQLHSCVVKMGVCDDIFVACALIDMYSKCGSIDDAQFVFDEMPEKTTVGWNTIIAGYALHGYSEEALSMYYEMQDAGVPMDHFTFSIVVRICARLGSLEHAKQAHAGLVRNGFSLDTVANTSLVDLYSKWGRIEDAQNVFDRMPYKNLISWNALIAGYGKHGRGEEAVALFERMLHEGMRPNHVTFLAVLSACSYSGLSDQGWEIFDSMSRIHGVTPRAMHYACMMELLGREGHLDEALALIREAPFEPTVNMWAALLTACRVHKNLELGRFAAEKLYGMGPEKLSNYVILLNIYNSMGKLEEAASVIHSLRQKGLRMLPACTWIEIKKQSYAFLSNDRSHPQTNKIYQRLDDLLLEISKHGYAPERRSLLPDVDEKEGRLLLHHSEKLAVAFGLMNTPEYMPLQLVQSHRICNDCHKALKLISKVTGREIVVRDGSRFHRFNKGSCSCRDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST