Transcript Information: S_Transcript_110269.p1


Annotated TAIR IDAT5G35695.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:13869120-13869941 | Forward length=211
E-Value8E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.86781525766893
Replicate 21.4388775798379
Replicate 32.0046452264783
Condition 2: 8 Hour
Replicate 11.8543817667072
Replicate 23.4044117495236
Replicate 32.0852459613569
Condition 3: 24 Hour
Replicate 12.136999471906
Replicate 21.4780746680227
Replicate 33.2898318789282


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_110269.p1 GENE.S_Transcript_110269~~S_Transcript_110269.p1 ORF type:3prime_partial len:92 (+),score=6.05,DDE_Tnp_4|PF13359.2|4.1e-09 S_Transcript_110269:214-486(+)
ATGCTCCTGAAGGAAAATATTATCTTGCGGATGCTAGATCCAAACATGAAAGGGTTCCTTGCTCCTTTTAAGGGAAAAACGATTCGTTATCATCTTCCGGAATTTAAACGCTCAAGCCAACCTCCAACTGGATATCATGAAGCCTTTAATTTTGCTCATGCATCGCTTCATAATGTAATTGAACGGGCATTTGGAGTATGGAAAAATAGGTGGAGTATATTGTTTAAGATGCCAAGTTACAAATTCTCTACGCAATGCAAAATTGTGGCAACT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_110269.p1 GENE.S_Transcript_110269~~S_Transcript_110269.p1 ORF type:3prime_partial len:92 (+),score=6.05,DDE_Tnp_4|PF13359.2|4.1e-09 S_Transcript_110269:214-486(+)
MLLKENIILRMLDPNMKGFLAPFKGKTIRYHLPEFKRSSQPPTGYHEAFNFAHASLHNVIERAFGVWKNRWSILFKMPSYKFSTQCKIVAT

Click here to download the sequence:
Link to NCBI Protein BLAST