Transcript Information: S_Transcript_110289.p1


Annotated TAIR IDAT5G50990.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:20739453-20741281 | Forward length=534
E-Value2E-113
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.0884642224917
Replicate 21.9787255208534
Replicate 32.3156798669992
Condition 2: 8 Hour
Replicate 13.1557752487237
Replicate 22.3575714934241
Replicate 32.9153961970939
Condition 3: 24 Hour
Replicate 12.4979575291935
Replicate 23.303021866508
Replicate 31.6399984030232


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_110289.p1 GENE.S_Transcript_110289~~S_Transcript_110289.p1 ORF type:complete len:446 (+),score=95.74,PPR|PF01535.16|1.4e+02,PPR|PF01535.16|0.0039,PPR|PF01535.16|1.7e-07,PPR|PF01535.16|0.02,PPR|PF01535.16|0.15,PPR|PF01535.16|8.4e-06,PPR|PF01535.16|0.8,PPR|PF01535.16|0.0034,PPR|PF01535.16|2.9e+03,PPR|PF01535.16|3.1e+02,PPR_2|PF13041.2|9.3e+03,PPR_2|PF13041.2|0.00024,PPR_2|PF13041.2|3.7e-14,PPR_2|PF13041.2|30,PPR_2|PF13041.2|3.7e-09,PPR_2|PF13041.2|12,PPR_2|PF13041.2|0.11,PPR_2|PF13041.2|1.7e+03,PPR_3|PF13812.2|2.4e+02,PPR_3|PF13812.2|1.1,PPR_3|PF13812.2|0.0068,PPR_3|PF13812.2|0.45,PPR_3|PF13812.2|21,PPR_3|PF13812.2|0.081,PPR_3|PF13812.2|0.45,PPR_3|PF13812.2|0.28,PPR_3|PF13812.2|4.1e+03,PPR_1|PF12854.3|0.00056,PPR_1|PF12854.3|0.0035,PPR_1|PF12854.3|0.056,PPR_1|PF12854.3|9.3,PPR_1|PF12854.3|0.11,PPR_1|PF12854.3|0.072,PPR_1|PF12854.3|1.4e+02 S_Transcript_110289:214-1551(+)
ATGCCATTGCCAAAGAGAGGTTTTAATATTCAACAATCCTCACGCCTTTTCTCTCTCTTTCGCTTTTCGTCCCAAACTTCATGCCATCCCCATTTCGCCGCTAAAACCACAGATGATCAAATGCTTACACGTGTTGTTCATGATTGCAAAACATCCTTGGATTTGAGATCTGCATTAAAATCACATGCAAGAATTGTGAAAGCCGGATTTAGTATGGATCCTCCACTCGTATCTTCCCTTCTGCGAACGTACATTAGTTGTGGCCATCTTCATCTTGCACACTGGCTTTTGGACGAGACTCCGTGTCAGAATCTTGATTTGGTTACCTGCAATAAATTGATTGCAAGTTTCATGAAGAATAAAGATGTTGATGCTGCCAAAAGGTTGTTTCTTAATATGCCTTCTAAAGATGTTGTTTCTTGGAATTCTATGATTGGTGGCTGTGTCAAGAATTCTCAATTTGAGGAGGCATTGAGGTTCTTCAAAGTTATGTGTTCTTTGAGTGTTGAGCCGGATAAGTTTACGTTTTCTTCTGTTATTGCAGCATGTGCACGACTGGGAGCCCTTGATAATGCTTTGTGGATACATGATCAGTTGATTGGGAAGAAAATCATTTTGAGTGACATTTTGCTTGCTGCACTGACAGACATGTATGCAAAATGTGGGCAAATTGAAAAAGCAAAAGAAGTTTTCGATGGGACTCAGAGCAGTGATGTATCAGTTTGGAATGCCATGATTACTGGCTTAGCAATTCATGGACTTGCTGTTGATGCTGTTTCTGTATTCTCTGATATGGAGAAGAAAAATGTTTCTCCGGATGGTGCAACTTTCCTTGGAATTCTAACTGCATGTAGTCATTGTGGCTTAGTTGAACTGGGAGAGAGATACTTTGATATTATGAGAGAGAAATACTCAGTGGAACCACAACTTGAGCATTATAGCGCTATGGTGGATCTCTTTGGCCGTGCAGGACGCCTAGAAGAAGCTTATGACACCATCAAAGCTATGCCAATGGAACCTGATGCGGTGGTATGGAGGACTCTCCTTAGTGCTTGTAGAACTCACAAAAACTCGGTATTAGGGGAAATTGCTATTTCAAACATATCTTCTTCTCTTGATGGTGGTGATTATGTCTTGCTCTCAAACACTTACTGTTCCTTAGACCAGTGGAGTAGCTCTGCCAACATGAGAAATGTTATGAGAAGGGAGGGAGTTCGAAAGGACCATGGAAAGAGTTGGATCGAGTTGGCTGATGTTATATATCATTTTAGGGCTGGCGATCAGTTGCATCCTGAAATAGAGGCAATATACAATGTTCTGAAAAAATTGATTGGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_110289.p1 GENE.S_Transcript_110289~~S_Transcript_110289.p1 ORF type:complete len:446 (+),score=95.74,PPR|PF01535.16|1.4e+02,PPR|PF01535.16|0.0039,PPR|PF01535.16|1.7e-07,PPR|PF01535.16|0.02,PPR|PF01535.16|0.15,PPR|PF01535.16|8.4e-06,PPR|PF01535.16|0.8,PPR|PF01535.16|0.0034,PPR|PF01535.16|2.9e+03,PPR|PF01535.16|3.1e+02,PPR_2|PF13041.2|9.3e+03,PPR_2|PF13041.2|0.00024,PPR_2|PF13041.2|3.7e-14,PPR_2|PF13041.2|30,PPR_2|PF13041.2|3.7e-09,PPR_2|PF13041.2|12,PPR_2|PF13041.2|0.11,PPR_2|PF13041.2|1.7e+03,PPR_3|PF13812.2|2.4e+02,PPR_3|PF13812.2|1.1,PPR_3|PF13812.2|0.0068,PPR_3|PF13812.2|0.45,PPR_3|PF13812.2|21,PPR_3|PF13812.2|0.081,PPR_3|PF13812.2|0.45,PPR_3|PF13812.2|0.28,PPR_3|PF13812.2|4.1e+03,PPR_1|PF12854.3|0.00056,PPR_1|PF12854.3|0.0035,PPR_1|PF12854.3|0.056,PPR_1|PF12854.3|9.3,PPR_1|PF12854.3|0.11,PPR_1|PF12854.3|0.072,PPR_1|PF12854.3|1.4e+02 S_Transcript_110289:214-1551(+)
MPLPKRGFNIQQSSRLFSLFRFSSQTSCHPHFAAKTTDDQMLTRVVHDCKTSLDLRSALKSHARIVKAGFSMDPPLVSSLLRTYISCGHLHLAHWLLDETPCQNLDLVTCNKLIASFMKNKDVDAAKRLFLNMPSKDVVSWNSMIGGCVKNSQFEEALRFFKVMCSLSVEPDKFTFSSVIAACARLGALDNALWIHDQLIGKKIILSDILLAALTDMYAKCGQIEKAKEVFDGTQSSDVSVWNAMITGLAIHGLAVDAVSVFSDMEKKNVSPDGATFLGILTACSHCGLVELGERYFDIMREKYSVEPQLEHYSAMVDLFGRAGRLEEAYDTIKAMPMEPDAVVWRTLLSACRTHKNSVLGEIAISNISSSLDGGDYVLLSNTYCSLDQWSSSANMRNVMRREGVRKDHGKSWIELADVIYHFRAGDQLHPEIEAIYNVLKKLIG*

Click here to download the sequence:
Link to NCBI Protein BLAST