Transcript Information: S_Transcript_11126.p1


Annotated TAIR IDAT5G23890.1
Annotated Gene NameLOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: S-layer Homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52410.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:8058789-8063005 | Forward length=946
E-Value4E-62
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.4582290297556
Replicate 23.4999204318146
Replicate 32.8515877077053
Condition 2: 8 Hour
Replicate 13.7255199951618
Replicate 23.9981817850114
Replicate 33.2102180127984
Condition 3: 24 Hour
Replicate 14.0794661940266
Replicate 23.458734296792
Replicate 32.8362138286877


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_11126.p1 GENE.S_Transcript_11126~~S_Transcript_11126.p1 ORF type:3prime_partial len:498 (+),score=135.85 S_Transcript_11126:439-1929(+)
ATGACATCTTTATCAACAACAACGTGGTCTCCTACCTCTTATCAGCTCAAATTCAACTTCAAGTTGAAGAAATATTCAACCCCTTCATTAATGTTTTTAAGGGGTAGAGTTTCAAGCTCCAATGATTGTCACAAGTTCCCGGTTTGCTGTGTTGCTCAAGATGGGGCAAAGAGTGATAGTAATAGTAGTAGTGAATCAGAAGGAACTCGTTCTGCTAATTTTTGGAATGGTTCTTCAGTTGATGCTGCTTTGAGTGATTGGTTTGGTAACCCTGAACTATCTGGTGATTCTAATCACAAGCAGGGAATTGGAGGAATTTTGGGAGTAGGGCTTGCCAGCGTTTTTCTTGTTGCGGGTATTACCTTTGCAGCGATGTCAATCGGCAAGCGGAGCAGCTCAAGGCCAAGACAAGAGATGGAGCCCTTGACGGCACAGCAAGAAGTGTTGTTAACTTCAGAAGATAATGTTCTCATAGAGGAAAATGATGAAAGTGCGGAGGATAGTGTTAAAGATGAAAGAAACCTGCCAACTGATGATTATGCAGAAAATAAAACAGATTCACAGAACATCCTTGCTGTGAGTGAAACTGAAGAAAATGTGGATGCTGCTGTACTATCTAATTCTGATACTGATGCTGATGTCCTTGCCACAAATGACCAGCAAGCTACCCTTGCCACAATCCAAGCAGACTCTCTCCATACTGCACTTGAATCGTCTTCTAGTACTATTTCTCATGGGTCTGCCAATTCTCAAGCTGCATCAGTTTCAAGTAATGATGAAATTGAATTGAGCAAGCCACTTCAGTTTTCTGGTGAAACTAATGAATCACTGACTAGTGATAATAGTTCTAAGGAGGACGAACCTTCTAGTATAGCATCTTCTGTAGCAAAATCATCTGCCGATAAGCTGGAACTAGATGCCATTGATGGGAGACTTGCATCAGAGTCCCCCAGGAATGCCTTTACCTCTAGAGGAATTCCTGCACCGTCTCTTCTTTCTGCAGCACTTCAGGTGCCTCCTGGAATGGTTTTGGTTCCTGCTGTCATTGATCAAACTCAAGGGCAAGCGTTGGCAGCATTGCAAGTCTTGAAGGTCATTGAGAGTGATGCTCAACCAGGTGATCTTTGTACGCGTCGTGAGTATGCCCGTTGGCTAGTTTCTGCTAGTAGTGCTCTGTCACGAAACTCGATTTCAAAGGTCTATCCTGCTATGTACATAGAAAATGTTACTGAGCTTGCATTTGATGATATCACACCTGAAGATCCAGATTTCACATGCATCCAAGGCTTGGCAGAAGCGGGTTTGATTTCTAGCAAGCTTTCAAAACGTGATATGCTTTCTTCTCCTGAAGAGGAGATAGGCTCCTTTTTCTTCCATCCTGATAGCCCTCTGTCTCGTCAGGATCTTGTCACCTGGAAGATGGCCCTAGAAAAGAGGGAGTTGCCTGAAGCTGACAAAAAGATCCTTCACCTGCATTCCGGCTTCATTGAC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_11126.p1 GENE.S_Transcript_11126~~S_Transcript_11126.p1 ORF type:3prime_partial len:498 (+),score=135.85 S_Transcript_11126:439-1929(+)
MTSLSTTTWSPTSYQLKFNFKLKKYSTPSLMFLRGRVSSSNDCHKFPVCCVAQDGAKSDSNSSSESEGTRSANFWNGSSVDAALSDWFGNPELSGDSNHKQGIGGILGVGLASVFLVAGITFAAMSIGKRSSSRPRQEMEPLTAQQEVLLTSEDNVLIEENDESAEDSVKDERNLPTDDYAENKTDSQNILAVSETEENVDAAVLSNSDTDADVLATNDQQATLATIQADSLHTALESSSSTISHGSANSQAASVSSNDEIELSKPLQFSGETNESLTSDNSSKEDEPSSIASSVAKSSADKLELDAIDGRLASESPRNAFTSRGIPAPSLLSAALQVPPGMVLVPAVIDQTQGQALAALQVLKVIESDAQPGDLCTRREYARWLVSASSALSRNSISKVYPAMYIENVTELAFDDITPEDPDFTCIQGLAEAGLISSKLSKRDMLSSPEEEIGSFFFHPDSPLSRQDLVTWKMALEKRELPEADKKILHLHSGFID

Click here to download the sequence:
Link to NCBI Protein BLAST