Transcript Information: S_Transcript_11128.p1


Annotated TAIR IDAT5G23890.1
Annotated Gene NameLOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: S-layer Homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52410.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:8058789-8063005 | Forward length=946
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.6979029954313
Replicate 28.909023523784
Replicate 38.3755602348343
Condition 2: 8 Hour
Replicate 112.761838724459
Replicate 212.61231735394
Replicate 314.30593798992
Condition 3: 24 Hour
Replicate 16.6218830267908
Replicate 28.1883793502911
Replicate 35.755365837409


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_11128.p1 GENE.S_Transcript_11128~~S_Transcript_11128.p1 ORF type:complete len:894 (+),score=280.36,SLH|PF00395.16|0.076,SLH|PF00395.16|0.43 S_Transcript_11128:414-3095(+)
ATGACATCTTTATCAACAGCAACATGGTCTACGACCTCTTATCAGCTCAAATTCAACTTCAAGTTGAAGAAATATTCAACCCCTTCATTAATGTTTTTAAGGGGTAGAGTTTCAAGCTCCAATGATTGTCACAAGTTCCCGGTTTGCTGTGTTGCTCAAGATGGGGCAAAGAGTGAGAGTAGTAATAGCAGCAGTGAATCAGAACGACCTCCTTCTGCTAATTCTTGGAATGGTTCTTCAGTTGATACTGCTTTGAGTGATTGGTTCGGTAACCCTGAACTGTCTGGTGATTCTGACCGCAGGCAGGGAATTGGAGGAATTTTGGGAGTAGGGCTTGCCAGCGTTTTTCTTGTTGCGGGTATTACCTTTGCAGCGATGTCAATCGGCAAGCGGAGCAGCTCAAGGCCAAGACAAGAGATGGAGCCCTTGACGGCACAGCAAGAAGTGTTGTTAACTTCAGAAGAGAAGGTTCACACAGAGGAAAATGATGAAAGTGCGAAGGATGGTGTTAAAGATGAAAGAAACCTGCCAACTGATGATTATGCAGAAAATAAAACAGATTCACAGAACATCCTTGCTGTGAGTGAAACTGAAGAAAATGTGGATGCTGCTGTACTATCTAATTCTGATACTGATGCTGATGTCCTTGCCACAAATGACCAGCAAGCTATCCTTGCTGAAAGCCAAGGAGACTCTCTCCATACTGCACTTGAATCATCTTCTAGTACTAATTCTCATGTGTCTTCCAATTCTCAAGCTCCAGATAGCATATTTGATGCTAATTTGGAGGAAGGTCTAGAAACTCAAAATGCTCCCCAGAGTGATATAGGAGTTGCTGCATCAGTTTCAAGCAATGATGATGTTGAGTTGAGCAAGCCACTTCATTTTTCTGGTGAAACTAATGAGTCACTGACTAGTGATAATAGTTCTAAGGAGGAGGAACCTTCTGGTATAGCATCTTCTGTAGCAATATCATCTGCTGATAAGCAGGAACTAGATGCCAATGATGGGAGACTTGCATCAGAGTCCCCCAGGAATGCCTTTACCTCTAGAGGAATTCCTGCACCGTCTCTTCTTTCTGCAGCACTTCAGGTGCCTCCTGGAATGGTTTTGGTTCCTGCTGTCATTGATCAAACTCAAGGGCAAGCGTTGGCAGCATTGCAAGTCTTGAAGGTCATTGAGAGTGATGCTCAACCAGGTGATCTTTGTACGCGTCGTGAGTATGCCCGTTGGCTAGTTTCTGCTAGTAGTGCTCTGTCACGAAACTCGATTTCAAAGGTCTATCCTGCTATGTACATAGAAAATGTTACTGAGCTTGCATTTGATGATATCACACCTGAAGATCCAGATTTCACATGCATCCAAGGCTTGGCAGAAGCGGGTTTGATTTCTAGCAAGCTTTCAAAACGTGATATGCTTTCTTCTCCTGAAGAGGAGATAGGCTCCTTTTTCTTCCATCCTGATAGCCCTCTGTCTCGTCAGGATCTTGTCACCTGGAAGATGGCCCTAGAAAAGAGGGAGTTGCCTGAAGCTGACAAAAAGATCCTTCACCTGCATTCCGGCTTCATTGACATCGACAAGATTGACCCAGATGCATGGCCTGCACTTATGGGTGACTTATCTGCAGGAGAGCAAGGAATTGTGGCTCTTGCCTTTGGCTACACAAGACTTTTTCAGCCGGATAAGCCTGTCACAAAAGGCCAAGCTGCAATTGCTCTTGCAACTGGGGAAGCAGCCGACATAGTAAGTGAAGAACTTGCTCGTATTGAAGCCGAGTCTGTTGCTGAAAATGCAGTTGCTACACATAATGCATTGGTAGCAGAAGTTGAAATGGATATCAATGCAAGTTACGAAAAGGAGCTTCTGATGGAGAGGGAGAAAATAGAAGCTGTGCAGAAAATGGCTGAAGAGGCAAGGAAAGAAGTTGAAAGGCTTAGAGGTGAGAGAGAAGCAGAAAATGCTGCCCTGACAAAGGAACGGGCTGCTATTGAGTCAGAAATGGAAGTTCTTTCTCGATTGAGGCATGAGTTGGAGGAACAGTTGCAGAGTCTCATGAGTAACAAGGTTGAGATATCATATGAGAAGGAAAGGATTGAAAGTCTCCGGAAAGAGACTGAAGAAGAGAACCAGGCGATTTCACGGTTACAATATGAGCTAGAGGTGGAGCGGAAGGCTTTGTCAATGGCCCGGGCATGGGCTGAGGATGAAGCAAAAAGAGTGCAAGAACATGCAAAAGCCCTAGAAGAAGCGAGAGATCGCTGGGAGAGACAAGGCATCAAAGTCGTGGTTGATGAGGGTCTCCAGGAGGAGGCTTCAGCAGGAGTCACATGGGTCAATGTGGGGAAGAAACTGTCAGTAGAAGAAACTGTTGACAGGGCTGAAAATTTGACTGATAAGCTTAAGTCTATGGCTGCTGAAGTTGGTGGGAAATCTAAAGTGATAATAAACAAGATTGTTGAAAAGATGCAGCACCTAATATTAGTTCTGAAAGAATGGATCTCCCAAGCAGGCAGGCGAACAGCTGAATTCAAAGACGCTGCCAGTGCAAAAATAGGCACTTCCGTACAAGAGTTACAACAACAGGCAGCTGGTTTTGGCACAACAGTTACAGAAGGAGCTAAGCGTGCGGTTGGAGACTGTAGAGAAGGTGTTGAGAAACTTACTCAAAGGTTCAAGACGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_11128.p1 GENE.S_Transcript_11128~~S_Transcript_11128.p1 ORF type:complete len:894 (+),score=280.36,SLH|PF00395.16|0.076,SLH|PF00395.16|0.43 S_Transcript_11128:414-3095(+)
MTSLSTATWSTTSYQLKFNFKLKKYSTPSLMFLRGRVSSSNDCHKFPVCCVAQDGAKSESSNSSSESERPPSANSWNGSSVDTALSDWFGNPELSGDSDRRQGIGGILGVGLASVFLVAGITFAAMSIGKRSSSRPRQEMEPLTAQQEVLLTSEEKVHTEENDESAKDGVKDERNLPTDDYAENKTDSQNILAVSETEENVDAAVLSNSDTDADVLATNDQQAILAESQGDSLHTALESSSSTNSHVSSNSQAPDSIFDANLEEGLETQNAPQSDIGVAASVSSNDDVELSKPLHFSGETNESLTSDNSSKEEEPSGIASSVAISSADKQELDANDGRLASESPRNAFTSRGIPAPSLLSAALQVPPGMVLVPAVIDQTQGQALAALQVLKVIESDAQPGDLCTRREYARWLVSASSALSRNSISKVYPAMYIENVTELAFDDITPEDPDFTCIQGLAEAGLISSKLSKRDMLSSPEEEIGSFFFHPDSPLSRQDLVTWKMALEKRELPEADKKILHLHSGFIDIDKIDPDAWPALMGDLSAGEQGIVALAFGYTRLFQPDKPVTKGQAAIALATGEAADIVSEELARIEAESVAENAVATHNALVAEVEMDINASYEKELLMEREKIEAVQKMAEEARKEVERLRGEREAENAALTKERAAIESEMEVLSRLRHELEEQLQSLMSNKVEISYEKERIESLRKETEEENQAISRLQYELEVERKALSMARAWAEDEAKRVQEHAKALEEARDRWERQGIKVVVDEGLQEEASAGVTWVNVGKKLSVEETVDRAENLTDKLKSMAAEVGGKSKVIINKIVEKMQHLILVLKEWISQAGRRTAEFKDAASAKIGTSVQELQQQAAGFGTTVTEGAKRAVGDCREGVEKLTQRFKT*

Click here to download the sequence:
Link to NCBI Protein BLAST