Transcript Information: S_Transcript_11129.p1


Annotated TAIR IDAT5G23890.1
Annotated Gene NameLOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: S-layer Homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52410.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:8058789-8063005 | Forward length=946
E-Value4.1E-252
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.8544921916768
Replicate 24.9106741400645
Replicate 34.7530800130259
Condition 2: 8 Hour
Replicate 19.1070090704689
Replicate 29.4347732282553
Replicate 310.283364180039
Condition 3: 24 Hour
Replicate 15.6996767360975
Replicate 25.0203118294784
Replicate 35.6675733434286


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_11129.p1 GENE.S_Transcript_11129~~S_Transcript_11129.p1 ORF type:complete len:939 (+),score=293.73,SLH|PF00395.16|0.08,SLH|PF00395.16|0.45 S_Transcript_11129:414-3230(+)
ATGACATCTTTATCAACAGCAACATGGTCTACGACCTCTTATCAGCTCAAATTCAACTTCAAGTTGAAGAAATATTCAACCCCTTCATTAATGTTTTTAAGGGGTAGAGTTTCAAGCTCCAATGATTGTCACAAGTTCCCGGTTTGCTGTGTTGCTCAAGATGGGGCAAAGAGTGAGAGTAGTAATAGCAGCAGTGAATCAGAACGACCTCCTTCTGCTAATTCTTGGAATGGTTCTTCAGTTGATACTGCTTTGAGTGATTGGTTCGGTAACCCTGAACTGTCTGGTGATTCTGACCGCAGGCAGGGAATTGGAGGAATTTTGGGAGTAGGGCTTGCCAGCGTTTTTCTTGTTGCGGGTATTACCTTTGCAGCGATGTCAATCGGCAAGCGGAGCAGCTCAAGGCCAAGACAAGAGATGGAGCCCTTGACGGCACAGCAAGAAGTGTTGTTAACTTCAGAAGAGAAGGTTCACACAGAGGAAAATGATGAAAGTGCGAAGGATGGTGTTAAAGATGAAAGAAACCTGCCAACTGATGATTATGCAGAAAATAAAACAGGTGTTCTTGATGCTTCCACTCAAGAAAATTTGCAATCTGATTCTATGGTTCAAGATGTGCATAGTCCTGATGCAACTTCAACTTCATCTAGTATTGCTCAACTAGAAAATGCTGATGTGACATCTGGCTTTGTAGATTCACAGAACATCCTTGCTGTGAGTGAAACTGAAGAAAATGTGGATGCTGCTGTACTATCTAATTCTGATACTGATGCTGATGTCCTTGCCACAAATGACCAGCAAGCTATCCTTGCTGAAAGCCAAGGAGACTCTCTCCATACTGCACTTGAATCATCTTCTAGTACTAATTCTCATGTGTCTTCCAATTCTCAAGCTCCAGATAGCATATTTGATGCTAATTTGGAGGAAGGTCTAGAAACTCAAAATGCTCCCCAGAGTGATATAGGAGTTGCTGCATCAGTTTCAAGCAATGATGATGTTGAGTTGAGCAAGCCACTTCATTTTTCTGGTGAAACTAATGAGTCACTGACTAGTGATAATAGTTCTAAGGAGGAGGAACCTTCTGGTATAGCATCTTCTGTAGCAATATCATCTGCTGATAAGCAGGAACTAGATGCCAATGATGGGAGACTTGCATCAGAGTCCCCCAGGAATGCCTTTACCTCTAGAGGAATTCCTGCACCGTCTCTTCTTTCTGCAGCACTTCAGGTGCCTCCTGGAATGGTTTTGGTTCCTGCTGTCATTGATCAAACTCAAGGGCAAGCGTTGGCAGCATTGCAAGTCTTGAAGGTCATTGAGAGTGATGCTCAACCAGGTGATCTTTGTACGCGTCGTGAGTATGCCCGTTGGCTAGTTTCTGCTAGTAGTGCTCTGTCACGAAACTCGATTTCAAAGGTCTATCCTGCTATGTACATAGAAAATGTTACTGAGCTTGCATTTGATGATATCACACCTGAAGATCCAGATTTCACATGCATCCAAGGCTTGGCAGAAGCGGGTTTGATTTCTAGCAAGCTTTCAAAACGTGATATGCTTTCTTCTCCTGAAGAGGAGATAGGCTCCTTTTTCTTCCATCCTGATAGCCCTCTGTCTCGTCAGGATCTTGTCACCTGGAAGATGGCCCTAGAAAAGAGGGAGTTGCCTGAAGCTGACAAAAAGATCCTTCACCTGCATTCCGGCTTCATTGACATCGACAAGATTGACCCAGATGCATGGCCTGCACTTATGGGTGACTTATCTGCAGGAGAGCAAGGAATTGTGGCTCTTGCCTTTGGCTACACAAGACTTTTTCAGCCGGATAAGCCTGTCACAAAAGGCCAAGCTGCAATTGCTCTTGCAACTGGGGAAGCAGCCGACATAGTAAGTGAAGAACTTGCTCGTATTGAAGCCGAGTCTGTTGCTGAAAATGCAGTTGCTACACATAATGCATTGGTAGCAGAAGTTGAAATGGATATCAATGCAAGTTACGAAAAGGAGCTTCTGATGGAGAGGGAGAAAATAGAAGCTGTGCAGAAAATGGCTGAAGAGGCAAGGAAAGAAGTTGAAAGGCTTAGAGGTGAGAGAGAAGCAGAAAATGCTGCCCTGACAAAGGAACGGGCTGCTATTGAGTCAGAAATGGAAGTTCTTTCTCGATTGAGGCATGAGTTGGAGGAACAGTTGCAGAGTCTCATGAGTAACAAGGTTGAGATATCATATGAGAAGGAAAGGATTGAAAGTCTCCGGAAAGAGACTGAAGAAGAGAACCAGGCGATTTCACGGTTACAATATGAGCTAGAGGTGGAGCGGAAGGCTTTGTCAATGGCCCGGGCATGGGCTGAGGATGAAGCAAAAAGAGTGCAAGAACATGCAAAAGCCCTAGAAGAAGCGAGAGATCGCTGGGAGAGACAAGGCATCAAAGTCGTGGTTGATGAGGGTCTCCAGGAGGAGGCTTCAGCAGGAGTCACATGGGTCAATGTGGGGAAGAAACTGTCAGTAGAAGAAACTGTTGACAGGGCTGAAAATTTGACTGATAAGCTTAAGTCTATGGCTGCTGAAGTTAGCGGGAAATCTAAAGAGATAATAAACAAGATTGTCGAAAAGATGCAGAACCTAATACTAGTTCTGAAAGAATGGATCTCCCAAGCAGGCAGGCGAACAGCTGAATTCAAAGACGCTGCCAGTGCAAAAATAGGCACTTCCGTACAAGAGTTACAACAACAGGCAGCTGGTTTTGGCACAACAGTTACAGAAGGAGCTAAGCGTGCGGTTGGAGACTGTAGAGAAGGTGTTGAGAAACTTACTCAAAGGTTCAAGACGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_11129.p1 GENE.S_Transcript_11129~~S_Transcript_11129.p1 ORF type:complete len:939 (+),score=293.73,SLH|PF00395.16|0.08,SLH|PF00395.16|0.45 S_Transcript_11129:414-3230(+)
MTSLSTATWSTTSYQLKFNFKLKKYSTPSLMFLRGRVSSSNDCHKFPVCCVAQDGAKSESSNSSSESERPPSANSWNGSSVDTALSDWFGNPELSGDSDRRQGIGGILGVGLASVFLVAGITFAAMSIGKRSSSRPRQEMEPLTAQQEVLLTSEEKVHTEENDESAKDGVKDERNLPTDDYAENKTGVLDASTQENLQSDSMVQDVHSPDATSTSSSIAQLENADVTSGFVDSQNILAVSETEENVDAAVLSNSDTDADVLATNDQQAILAESQGDSLHTALESSSSTNSHVSSNSQAPDSIFDANLEEGLETQNAPQSDIGVAASVSSNDDVELSKPLHFSGETNESLTSDNSSKEEEPSGIASSVAISSADKQELDANDGRLASESPRNAFTSRGIPAPSLLSAALQVPPGMVLVPAVIDQTQGQALAALQVLKVIESDAQPGDLCTRREYARWLVSASSALSRNSISKVYPAMYIENVTELAFDDITPEDPDFTCIQGLAEAGLISSKLSKRDMLSSPEEEIGSFFFHPDSPLSRQDLVTWKMALEKRELPEADKKILHLHSGFIDIDKIDPDAWPALMGDLSAGEQGIVALAFGYTRLFQPDKPVTKGQAAIALATGEAADIVSEELARIEAESVAENAVATHNALVAEVEMDINASYEKELLMEREKIEAVQKMAEEARKEVERLRGEREAENAALTKERAAIESEMEVLSRLRHELEEQLQSLMSNKVEISYEKERIESLRKETEEENQAISRLQYELEVERKALSMARAWAEDEAKRVQEHAKALEEARDRWERQGIKVVVDEGLQEEASAGVTWVNVGKKLSVEETVDRAENLTDKLKSMAAEVSGKSKEIINKIVEKMQNLILVLKEWISQAGRRTAEFKDAASAKIGTSVQELQQQAAGFGTTVTEGAKRAVGDCREGVEKLTQRFKT*

Click here to download the sequence:
Link to NCBI Protein BLAST