Transcript Information: S_Transcript_11130.p1


Annotated TAIR IDAT5G23890.1
Annotated Gene NameLOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: S-layer Homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52410.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:8058789-8063005 | Forward length=946
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.2580912459583
Replicate 25.7754728414524
Replicate 36.4842478453842
Condition 2: 8 Hour
Replicate 110.230581554112
Replicate 210.830621137743
Replicate 39.128692676394
Condition 3: 24 Hour
Replicate 16.8908285271535
Replicate 25.1384545414062
Replicate 36.1881028989551


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_11130.p1 GENE.S_Transcript_11130~~S_Transcript_11130.p1 ORF type:complete len:913 (+),score=273.42,SLH|PF00395.16|0.078,SLH|PF00395.16|0.44 S_Transcript_11130:414-3152(+)
ATGACATCTTTATCAACAGCAACATGGTCTACGACCTCTTATCAGCTCAAATTCAACTTCAAGTTGAAGAAATATTCAACCCCTTCATTAATGTTTTTAAGGGGTAGAGTTTCAAGCTCCAATGATTGTCACAAGTTCCCGGTTTGCTGTGTTGCTCAAGATGGGGCAAAGAGTGAGAGTAGTAATAGCAGCAGTGAATCAGAACGACCTCCTTCTGCTAATTCTTGGAATGGTTCTTCAGTTGATACTGCTTTGAGTGATTGGTTCGGTAACCCTGAACTGTCTGGTGATTCTGACCGCAGGCAGGGAATTGGAGGAATTTTGGGAGTAGGGCTTGCCAGCGTTTTTCTTGTTGCGGGTATTACCTTTGCAGCGATGTCAATCGGCAAGCGGAGCAGCTCAAGGCCAAGACAAGAGATGGAGCCCTTGACGGCACAGCAAGAAGTGTTGTTAACTTCAGAAGAGAAGGTTCACACAGAGGAAAATGATGAAAGTGCGAAGGATGGTGTTAAAGATGAAAGAAACCTGCCAACTGATGATTATGCAGAAAATAAAACAGGTGTTCTTGATGCTTCCACTCAAGAAAATTTGCAATCTGATTCTATGGTTCAAGATGTGCATAGTCCTGATGCAACTTCAACTTCATCTAGTATTGCTCAACTAGAAAATGCTGATGTGACATCTGGCTTTGTAGATTCACAGAACATCCTTGCTGTGAGTGAAACTGAAGAAAATGTGGATGCTGCTGTACTATCTAATTCTGATACTGATGCTGATGTCCTTGCCACAAATGACCAGCAAGCTACCCTTGCCACAATCCAAGCAGACTCTCTCCATACTGCACTTGAATCGTCTTCTAGTACTATTTCTCATGGGTCTGCCAATTCTCAAGCTGCATCAGTTTCAAGTAATGATGAAATTGAATTGAGCAAGCCACTTCAGTTTTCTGGTGAAACTAATGAATCACTGACTAGTGATAATAGTTCTAAGGAGGACGAACCTTCTAGTATAGCATCTTCTGTAGCAAAATCATCTGCCGATAAGCTGGAACTAGATGCCATTGATGGGAGACTTGCATCAGAGTCCCCCAGGAATGCCTTTACCTCTAGAGGAATTCCTGCACCGTCTCTTCTTTCTGCAGCACTTCAGGTGCCTCCTGGAATGGTTTTGGTTCCTGCTGTCATTGATCAAACTCAAGGGCAAGCGTTGGCAGCATTGCAAGTCTTGAAGGTCATTGAGAGTGATGCTCAACCAGGTGATCTTTGTACGCGTCGTGAGTATGCCCGTTGGCTAGTTTCTGCTAGTAGTGCTCTGTCACGAAACTCGATTTCAAAGGTCTATCCTGCTATGTACATAGAAAATGTTACTGAGCTTGCATTTGATGATATCACACCTGAAGATCCAGATTTCACATGCATCCAAGGCTTGGCAGAAGCGGGTTTGATTTCTAGCAAGCTTTCAAAACGTGATATGCTTTCTTCTCCTGAAGAGGAGATAGGCTCCTTTTTCTTCCATCCTGATAGCCCTCTGTCTCGTCAGGATCTTGTCACCTGGAAGATGGCCCTAGAAAAGAGGGAGTTGCCTGAAGCTGACAAAAAGATCCTTCACCTGCATTCCGGCTTCATTGACATTGACAAGATCGACCCAGACGCATGGCCTGCACTTATGGCTGACTTATCTGCAGGAGAACAAGGAATTGTGGCTCTTGCCTTTGGCTACACAAGACTTTTTCAGCCGGATAAGCCTGTCACAAAAGGCCAAGCTGCAATTGCTCTTGCAACTGGGGAAGCAGCCGACATAGTAAGTGAAGAACTTGCTCGTATTGAAGCCGAGTCTGTTGCTGAAAATGCAGTTGCTACACATAATGCATTGGTAGCAGAAGTTGAAATGGATATCAATGCAAGTTACGAAAAGGAGCTTCTGATGGAGAGGGAGAAAATAGAAGCTGTGCAGAAAATGGCTGAAGAGGCAAGGAAAGAAGTTGAAAGGCTTAGAGGTGAGAGAGAAGCAGAAAATGCTGCCCTGACAAAGGAACGGGCTGCTATTGAGTCAGAAATGGAAGTTCTTTCTCGATTGAGGCATGAGTTGGAGGAACAGTTGCAGAGTCTCATGAGTAACAAGGTTGAGATATCATATGAGAAGGAAAGGATTGAAAGTCTCCGGAAAGAGACTGAAGAAGAGAACCAGGCGATTTCACGGTTACAATATGAGCTAGAGGTGGAGCGGAAGGCTTTGTCAATGGCCCGGGCATGGGCTGAGGATGAAGCAAAAAGAGTGCAAGAACATGCAAAAGCCCTAGAAGAAGCGAGAGATCGCTGGGAGAGACAAGGCATCAAAGTCGTGGTTGATGAGGGTCTCCAGGAGGAGGCTTCAGCAGGAGTCACATGGGTCAATGTGGGGAAGAAACTGTCAGTAGAAGAAACTGTTGACAGGGCTGAAAATTTGACTGATAAGCTTAAGTCTATGGCTGCTGAAGTTAGCGGGAAATCTAAAGAGATAATAAACAAGATTGTCGAAAAGATGCAGAACCTAATACTAGTTCTGAAAGAATGGATCTCCCAAGCAGGCAGGCGAACAGCTGAATTCAAAGACGCTGCCAGTGCAAAAATAGGCACTTCCGTACAAGAGTTACAACAACAGGCAGCTGGTTTTGGCACAACAGTTACAGAAGGAGCTAAGCGTGCGGTTGGAGACTGTAGAGAAGGTGTTGAGAAACTTACTCAAAGGTTCAAGACGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_11130.p1 GENE.S_Transcript_11130~~S_Transcript_11130.p1 ORF type:complete len:913 (+),score=273.42,SLH|PF00395.16|0.078,SLH|PF00395.16|0.44 S_Transcript_11130:414-3152(+)
MTSLSTATWSTTSYQLKFNFKLKKYSTPSLMFLRGRVSSSNDCHKFPVCCVAQDGAKSESSNSSSESERPPSANSWNGSSVDTALSDWFGNPELSGDSDRRQGIGGILGVGLASVFLVAGITFAAMSIGKRSSSRPRQEMEPLTAQQEVLLTSEEKVHTEENDESAKDGVKDERNLPTDDYAENKTGVLDASTQENLQSDSMVQDVHSPDATSTSSSIAQLENADVTSGFVDSQNILAVSETEENVDAAVLSNSDTDADVLATNDQQATLATIQADSLHTALESSSSTISHGSANSQAASVSSNDEIELSKPLQFSGETNESLTSDNSSKEDEPSSIASSVAKSSADKLELDAIDGRLASESPRNAFTSRGIPAPSLLSAALQVPPGMVLVPAVIDQTQGQALAALQVLKVIESDAQPGDLCTRREYARWLVSASSALSRNSISKVYPAMYIENVTELAFDDITPEDPDFTCIQGLAEAGLISSKLSKRDMLSSPEEEIGSFFFHPDSPLSRQDLVTWKMALEKRELPEADKKILHLHSGFIDIDKIDPDAWPALMADLSAGEQGIVALAFGYTRLFQPDKPVTKGQAAIALATGEAADIVSEELARIEAESVAENAVATHNALVAEVEMDINASYEKELLMEREKIEAVQKMAEEARKEVERLRGEREAENAALTKERAAIESEMEVLSRLRHELEEQLQSLMSNKVEISYEKERIESLRKETEEENQAISRLQYELEVERKALSMARAWAEDEAKRVQEHAKALEEARDRWERQGIKVVVDEGLQEEASAGVTWVNVGKKLSVEETVDRAENLTDKLKSMAAEVSGKSKEIINKIVEKMQNLILVLKEWISQAGRRTAEFKDAASAKIGTSVQELQQQAAGFGTTVTEGAKRAVGDCREGVEKLTQRFKT*

Click here to download the sequence:
Link to NCBI Protein BLAST