Transcript Information: S_Transcript_112269.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.1748541812076
Replicate 21.185716137448
Replicate 31.5221452045966
Condition 2: 8 Hour
Replicate 114.899121066097
Replicate 213.526165684288
Replicate 315.219760669967
Condition 3: 24 Hour
Replicate 11.467506568466
Replicate 21.4790203331973
Replicate 32.0332550192224


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_112269.p1 GENE.S_Transcript_112269~~S_Transcript_112269.p1 ORF type:complete len:521 (-),score=105.37,UBN2_3|PF14244.2|2.1e-34,Retrotrans_gag|PF03732.13|9.7e-07,Retrotrans_gag|PF03732.13|7.8e+03 S_Transcript_112269:3703-5265(-)
ATGTCTGCTGAAAAGAGAAACTCGAATTTTTTCAGCTACAGTGATCTTCAAAATCCACTTTTCTTACATCCATCTGATGGACCATCATCTATTGCAATTGAGGAAAAATTGCAAGGAGCTTCAAACTACAGGTCATGGCGAAGGAATATGGAGATAGCCTTGGCAACTAAACGCAAACTTGGATTTGTTACTGGTATGGTTACTCGATCTGACTGTGATTCTGTTAAAGCTGAGCGGTATGATACATGCAACTCTCTGATTATAGACTGGTTGTTGAATTCCATGATTGAGTCTATTAGAAAATCTGTTTTGTATTATGATTCTGCTCACTCTATGTGGTTGCATCTTGAGAAGAGGTTCTCTATTAACAATGGTTCTAGTAAATATAAATTGAATAAGGATGTGTATGATCTAAGGCAGAATGGTGCAAGAATTAGTGAATTTTACACCAGAATGAGGTGTCTCTGGGAAGAACTTGATTCCATGAGTGATTTGCCTAAACTGACCACTATTACTCCTGAGATGGATGCGTTTTTGAAGGCTCTTGATAAACAGCAAGAAGAGCATCGATTGTTTCAATTTCTTAATGGCTTGGATAATGTGTACAACACACAGAGGAGCAACTTGTTATTCCAGAACCCTCTCCCTACTGTCGAAATGGCACGTTCAAATCTTCAACAAGAAGAGAATCAAAGGGATATTATACCTAGTACAGATGTAGAGGTTGAATCTTCTGCTTTGTATAGTAAGGGAGATAGAGGAAGAGTAATTGATAGACACAGAGAAAAGATGAAATGCACTAGCTGTGGAAGGAGTGGACATACTAAGGAGAGATGTTGGACTGAAATTGGTTATCCTGCATGGCATACATTGGCCAAGAAATTTCCTCAAAAATCCAGGCCCAAGGACAACACAACTCCAAAACCATGGAATGCTTCTTCATCTGCCAAGCCAAGATTTGGAAGACCAGCTGCAAATCTATCTCATTCAACTTTTGAAGATAACACTGCAAATATTATGATGACACAACAACAATTTGATCAACTGATGAAGCTTGTTCCCTCTCAATCCAGACAGTTTTCTACTTCAGATGATGAGATCGAAGCTAATTTTGCAGGTATACTTTCTTGCCATAATGCTACAACTATGAGAAATGAATGGATACTTGATTCAAGTGCTTCGGATCATATGACTGCTTCACTTTCTCTTCTTTCTAATCCTATTCCAGCACCACATAAGCCTAAAATCAACCTACCAAATGGTGATGTGTCAGTTATTTCTCATGTTGGTTCTGTGAATCTGAACAATGGCATGATAATGACTGATGTGTTATTTGTTCCTTCTTTCAAACACAAACTTCTTTCTATTCACAAACTTACTTCTACCAATGACTGTTATGTGAAATTCTATCCTTCTTTTCGTGTGATTCAGGACTGTGCCACCCATAAACTTAGAGGTGTGGGCAGAGCTAAAGGTGGTCTCTATTATCTTGTAAACTCTGATGTGAGTGCTCTGGAAACTGATTTTTTACATGAGCTTTCTGTAGCTATTACTGATACCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_112269.p1 GENE.S_Transcript_112269~~S_Transcript_112269.p1 ORF type:complete len:521 (-),score=105.37,UBN2_3|PF14244.2|2.1e-34,Retrotrans_gag|PF03732.13|9.7e-07,Retrotrans_gag|PF03732.13|7.8e+03 S_Transcript_112269:3703-5265(-)
MSAEKRNSNFFSYSDLQNPLFLHPSDGPSSIAIEEKLQGASNYRSWRRNMEIALATKRKLGFVTGMVTRSDCDSVKAERYDTCNSLIIDWLLNSMIESIRKSVLYYDSAHSMWLHLEKRFSINNGSSKYKLNKDVYDLRQNGARISEFYTRMRCLWEELDSMSDLPKLTTITPEMDAFLKALDKQQEEHRLFQFLNGLDNVYNTQRSNLLFQNPLPTVEMARSNLQQEENQRDIIPSTDVEVESSALYSKGDRGRVIDRHREKMKCTSCGRSGHTKERCWTEIGYPAWHTLAKKFPQKSRPKDNTTPKPWNASSSAKPRFGRPAANLSHSTFEDNTANIMMTQQQFDQLMKLVPSQSRQFSTSDDEIEANFAGILSCHNATTMRNEWILDSSASDHMTASLSLLSNPIPAPHKPKINLPNGDVSVISHVGSVNLNNGMIMTDVLFVPSFKHKLLSIHKLTSTNDCYVKFYPSFRVIQDCATHKLRGVGRAKGGLYYLVNSDVSALETDFLHELSVAITDT*

Click here to download the sequence:
Link to NCBI Protein BLAST